Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0889 ATGTCGCTTAAAAGTTTTGTTAGAGAGCTGAGAGAGATGAAAGATGGAATTGGGAGCATTTCGAAGCGAGGAGAAGAAGGGAGCAGGCATTGGCGAAACCGAACGATGTCACATATTGCACCCGATCAAGAACCTTCTCCATTGGAGTTGGTTCATCAAGGTCGCTGGGCAAATCTGCCCCCTGAATTACTTTTAGACATCGTCCGGAGAGTGGAAGAGAGTGAAACCTCATGGCCGGATCGAGCTGTGGTTGTTTCTTGTGCTTCAGTTTGTAGGTCCTGGAGGGCCATTACAAAGGAAATTATCAGAACTCCTGAGCAATGTGGAAAGCTCACATTTCCTATCTCTTTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTTATTAGAAGGGATAGATCGACTTCGACGTACCTCCTGTACTTTGGCATGGTTCCTGCCGAGCGCGAAAAAGATAAATTGTTGCTGGCAGCCAAGAGGGTCAGAAGAGCAGCCGGTACTGATTTTATCATATCGTTATCAGCTGATGACTTTTCTCGAGCGGGTAGTACCTATGTTGGTAAACTAAGGTCTAATTTCCTGGGTACGAAGTTCTCGATTTATGACAGCCAACCTCCTTGTGACCCTGCAGCTCGGCAAAAGAGTCGATCAAGCCATAGATTTCGCTCGAAGCAGGTCTCCCCCAGAGTACCTGCATGTAACTACAGTGTAGGAACAATATCTTATGAACTTAATGTTCTTCGCACTAGAGGTCCTCGGAGGATGCACTGCATCATGCAAACGATTCCAGTCTCTTCAATTCAGGAGGGTGGCACTGCCCCAACACCTACATCATTCACATACTCTATGGATGACCACCTTTCTTCCATGTCCGAGTCTATGAGAATGGATTCCGCCAAAGACTTAGGCTCGAAGATCCTATCCGAACCAACAGCTCAAGGTTCAGATGAGTCCTTGATGCTTAAAAACAAGGCACCGAGATGGCATGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGACGCGTGACCGTGGCATCTGTCAAGAATTTCCAACTCGTCGCAGCTGTCGACGAATCTCACAACGTTTCAGTAGAAGAACAAGAGAAGGTGATTCTCCAGTTTGGTAAGATTGGAAAAGACATCTTCACCATGGATTACCACTACCCACTCTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTTGACACGAAGCCAGCTTGCGAATGA 1242 47.34 MSLKSFVRELREMKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEPSPLELVHQGRWANLPPELLLDIVRRVEESETSWPDRAVVVSCASVCRSWRAITKEIIRTPEQCGKLTFPISLKQPGPRESPFQCFIRRDRSTSTYLLYFGMVPAEREKDKLLLAAKRVRRAAGTDFIISLSADDFSRAGSTYVGKLRSNFLGTKFSIYDSQPPCDPAARQKSRSSHRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMHCIMQTIPVSSIQEGGTAPTPTSFTYSMDDHLSSMSESMRMDSAKDLGSKILSEPTAQGSDESLMLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDESHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6591280 6595080 + Sed0017874.1 Sed13g0889 734399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0889 413 PANTHER TUBBY-RELATED 43 412 - -
Sed13g0889 413 FunFam Tubby-like F-box protein 113 413 - -
Sed13g0889 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Sed13g0889 413 SUPERFAMILY Tubby C-terminal domain-like 105 413 IPR025659 -
Sed13g0889 413 CDD F-box_AtTLP-like 56 100 - -
Sed13g0889 413 Pfam F-box-like 56 99 IPR001810 GO:0005515(InterPro)
Sed13g0889 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Sed13g0889 413 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Sed13g0889 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Sed13g0889 413 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Sed13g0889 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Sed13g0889 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Sed13g0889 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Sed13g0889 413 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Sed13g0889 413 Gene3D - 50 103 - -
Sed13g0889 413 Pfam Tub family 117 408 IPR000007 -
Sed13g0889 413 Gene3D Tubby Protein; Chain A 114 413 IPR025659 -
Sed13g0889 413 MobiDBLite consensus disorder prediction 207 226 - -
Sed13g0889 413 SUPERFAMILY F-box domain 51 100 IPR036047 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2541 Sed-Chr1:19082732 Sed13g0889 Sed-Chr13:6591280 2.10E-141 dispersed
Sed04g1822 Sed-Chr4:32962645 Sed13g0889 Sed-Chr13:6591280 7.10E-123 dispersed
Sed12g0866 Sed-Chr12:5360522 Sed13g0889 Sed-Chr13:6591280 2.50E-120 dispersed
Sed13g0511 Sed-Chr13:3488451 Sed13g0889 Sed-Chr13:6591280 1.30E-128 dispersed
Sed13g0512 Sed-Chr13:3488451 Sed13g0889 Sed-Chr13:6591280 1.30E-128 dispersed
Sed13g0604 Sed-Chr13:4196530 Sed13g0889 Sed-Chr13:6591280 2.50E-96 dispersed
Sed13g0889 Sed-Chr13:6591280 Sed13g1637 Sed-Chr13:21475692 5.40E-145 dispersed
Sed13g0889 Sed-Chr13:6591280 Sed14g1125 Sed-Chr14:20719802 5.20E-164 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40394 PF01167 Tub 1.50E-106 CL0395 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0889 K19600 - csv:101205595 766.148