Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0935 ATGGTGAAATTCCATGGAGAAATCCACGATGAACAACAACAAGAAGATGGAGAAGAAGAAGAAGAAATCAGCTACGACGATCTCAAAAAGCGAGTATGGAAAGACAGACAGAGATTGAAGAAGATGAAGGAGAAGCTCGAAACCGAAGAACCCGAATCAACGACGGCGAGAGCAGAGGAAGCGTCTTGTCGGAAAAAGGCGGCCAGAGCATACGATTCCATCCTCAAATACATGGAGAAAATCATGGAGGCTTGCAACGCAAAAGGGTTCGTTTATGGGATCGTGCCGGAAAACGGCAACCCGGTCACCGGAACCTCCGAGAGCCTCCGCGAGTGGTGGACCGACAACGCCCGGTTCGAACAGACCGCTCCGACGGCCGTAGCCAAATTCCTCCCCAAAGTAATCGAAGAAACAGGGAGCGATAACGAATCGTTTCTGCATTTGTTGCAGGATTTGCAGGACACGACTTTGGGGTCGATGTTGTCGGCGTTGTTGCAGCACTGTATTCCGCCGGAGAGGAAGTTTCCGTTGGAGAAGGGTCTGGCGCCGCCGTGGTGGCCGACGGGGAGGGAGATTTGGTGGGGGGAACAGGGCGCCGCCGGCGAGCACGGTGTTCCGCCGTATAAGAAGCCACATGATTTGAAAAAGGTGTGGAAGATTAGCGTGCTTGCGGCGGTGATTAAACACATGTCGCCGGATTTGAAGAACATGAGGAAATTGGTCCGGCAATCGAAGAATTTGCAGGCGAAAATGACGGCGAAGGATACGTTTACTTGGGCGAAAGTGGTGAATCAAGAAGAAGCTCTGTCGCTACTGACAAAAGAGAAGCTGAAAATTACAACCGGCGGCGACGACGACGACGACGAAGGCAAAAACAGAGCAGAACAGAGCTCCGGCGAAGAACGGAAAAACGGAGCAGAACAGAGTTTTGCGAAGCGGAAGTGTGTGTTTGATCGGGAAGTGGAAACGGAATCGGCGGTGTACGGTTGCCAGAATCAATGGTGCCCGCAGAGCACGGCGGCGATGGGATACGGCAACAAGAACACGAGAACAGAGCATGAGACGCAGTGCATTTACAGAGACGGCGGCGGCGGGGAGCAATTTCCCTACGAGGAATCGATCGATGCGCATTTGAAGAGCGTGTTGGAGTGGATGAATATGGAGCTGTTGAGGGCGGAGCCGAGCGGCAGCGACGACGGTGGAGATGGGTCCGGCGGCAGCACGGTGGAGGGTGACGGCGGTTGGTACTGGAACGGCGGCGATGGCGACGGCGTTTGA 1278 54.23 MVKFHGEIHDEQQQEDGEEEEEISYDDLKKRVWKDRQRLKKMKEKLETEEPESTTARAEEASCRKKAARAYDSILKYMEKIMEACNAKGFVYGIVPENGNPVTGTSESLREWWTDNARFEQTAPTAVAKFLPKVIEETGSDNESFLHLLQDLQDTTLGSMLSALLQHCIPPERKFPLEKGLAPPWWPTGREIWWGEQGAAGEHGVPPYKKPHDLKKVWKISVLAAVIKHMSPDLKNMRKLVRQSKNLQAKMTAKDTFTWAKVVNQEEALSLLTKEKLKITTGGDDDDDEGKNRAEQSSGEERKNGAEQSFAKRKCVFDREVETESAVYGCQNQWCPQSTAAMGYGNKNTRTEHETQCIYRDGGGGEQFPYEESIDAHLKSVLEWMNMELLRAEPSGSDDGGDGSGGSTVEGDGGWYWNGGDGDGV 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7066148 7067441 + Sed0008914.1 Sed13g0935 734445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0935 425 Pfam Ethylene insensitive 3, DNA-binding domain 26 267 IPR047091 GO:0003700(InterPro)
Sed13g0935 425 Gene3D - 138 276 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed13g0935 425 MobiDBLite consensus disorder prediction 392 425 - -
Sed13g0935 425 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 10 361 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Sed13g0935 425 Coils Coil 25 45 - -
Sed13g0935 425 FunFam Ethylene insensitive 3-like 1 140 277 - -
Sed13g0935 425 MobiDBLite consensus disorder prediction 1 25 - -
Sed13g0935 425 MobiDBLite consensus disorder prediction 279 309 - -
Sed13g0935 425 SUPERFAMILY DNA-binding domain of EIN3-like 146 269 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0935 K14514 - - csv:101210698 527.709
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1623 Sed-Chr12:27273232 Sed13g0935 Sed-Chr13:7066148 2.30E-83 dispersed
Sed13g0935 Sed-Chr13:7066148 Sed07g1748 Sed-Chr7:17462282 2.90E-133 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g1623 . 2 628 EIL Transcription Factor Family AT2G27050 59.7 3.1e-194 676.0
Sed11g1403 . 1 506 EIL Transcription Factor Family AT2G27050 62.3 1.1e-167 587.8
Sed03g0538 . 8 560 EIL Transcription Factor Family AT2G27050 56.6 1.1e-162 571.2
Sed08g1058 . 44 326 EIL Transcription Factor Family AT2G27050 63.2 4.2e-95 346.7
Sed08g1059 . 44 326 EIL Transcription Factor Family AT2G27050 63.2 4.2e-95 346.7
Sed12g1593 . 66 322 EIL Transcription Factor Family AT2G27050 63.6 9.2e-90 328.9
Sed07g1748 . 8 295 EIL Transcription Factor Family AT2G27050 52.5 5.9e-81 299.7
Sed08g1058 . 44 590 EIL Transcription Factor Family AT1G73730 52.1 7.3e-137 485.3
Sed08g1059 . 44 590 EIL Transcription Factor Family AT1G73730 52.1 7.3e-137 485.3
Sed12g1593 . 58 575 EIL Transcription Factor Family AT1G73730 54.6 2.3e-135 480.3
Sed03g0538 . 35 335 EIL Transcription Factor Family AT1G73730 60.3 3.1e-103 373.6
Sed12g1623 . 36 334 EIL Transcription Factor Family AT1G73730 61.6 3.1e-103 373.6
Sed11g1403 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 1.2e-102 371.7
Sed07g1748 . 15 262 EIL Transcription Factor Family AT1G73730 53.9 3.7e-72 270.4
Sed13g0935 . 21 269 EIL Transcription Factor Family AT1G73730 52.0 4.8e-72 270.0
Sed12g1623 . 3 628 EIL Transcription Factor Family AT3G20770 61.5 3.0e-211 732.6
Sed11g1403 . 7 504 EIL Transcription Factor Family AT3G20770 63.2 3.7e-169 592.8
Sed03g0538 . 7 501 EIL Transcription Factor Family AT3G20770 61.9 2.5e-165 580.1
Sed08g1058 . 44 292 EIL Transcription Factor Family AT3G20770 68.5 9.2e-96 349.0
Sed08g1059 . 44 292 EIL Transcription Factor Family AT3G20770 68.5 9.2e-96 349.0
Sed12g1593 . 66 288 EIL Transcription Factor Family AT3G20770 69.9 4.4e-90 330.1
Sed07g1748 . 8 261 EIL Transcription Factor Family AT3G20770 57.0 6.0e-79 293.1
Sed07g1748 . 7 274 EIL Transcription Factor Family AT5G65100 57.5 9.7e-89 325.5
Sed08g1058 . 44 288 EIL Transcription Factor Family AT5G65100 51.9 6.3e-72 269.6
Sed08g1059 . 44 288 EIL Transcription Factor Family AT5G65100 51.9 6.3e-72 269.6
Sed12g1593 . 83 284 EIL Transcription Factor Family AT5G65100 60.2 3.5e-70 263.8
Sed13g0935 . 21 359 EIL Transcription Factor Family AT5G10120 54.9 1.9e-98 357.5
Sed07g1748 . 12 324 EIL Transcription Factor Family AT5G10120 56.0 8.4e-94 342.0
Sed08g1058 . 44 290 EIL Transcription Factor Family AT5G10120 54.9 6.3e-73 272.7
Sed08g1059 . 44 290 EIL Transcription Factor Family AT5G10120 54.9 6.3e-73 272.7
Sed12g1593 . 77 286 EIL Transcription Factor Family AT5G10120 58.0 4.5e-71 266.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40396 PF04873 EIN3 4.00E-104 No_clan Sed TF