Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0935 ATGGTGAAATTCCATGGAGAAATCCACGATGAACAACAACAAGAAGATGGAGAAGAAGAAGAAGAAATCAGCTACGACGATCTCAAAAAGCGAGTATGGAAAGACAGACAGAGATTGAAGAAGATGAAGGAGAAGCTCGAAACCGAAGAACCCGAATCAACGACGGCGAGAGCAGAGGAAGCGTCTTGTCGGAAAAAGGCGGCCAGAGCATACGATTCCATCCTCAAATACATGGAGAAAATCATGGAGGCTTGCAACGCAAAAGGGTTCGTTTATGGGATCGTGCCGGAAAACGGCAACCCGGTCACCGGAACCTCCGAGAGCCTCCGCGAGTGGTGGACCGACAACGCCCGGTTCGAACAGACCGCTCCGACGGCCGTAGCCAAATTCCTCCCCAAAGTAATCGAAGAAACAGGGAGCGATAACGAATCGTTTCTGCATTTGTTGCAGGATTTGCAGGACACGACTTTGGGGTCGATGTTGTCGGCGTTGTTGCAGCACTGTATTCCGCCGGAGAGGAAGTTTCCGTTGGAGAAGGGTCTGGCGCCGCCGTGGTGGCCGACGGGGAGGGAGATTTGGTGGGGGGAACAGGGCGCCGCCGGCGAGCACGGTGTTCCGCCGTATAAGAAGCCACATGATTTGAAAAAGGTGTGGAAGATTAGCGTGCTTGCGGCGGTGATTAAACACATGTCGCCGGATTTGAAGAACATGAGGAAATTGGTCCGGCAATCGAAGAATTTGCAGGCGAAAATGACGGCGAAGGATACGTTTACTTGGGCGAAAGTGGTGAATCAAGAAGAAGCTCTGTCGCTACTGACAAAAGAGAAGCTGAAAATTACAACCGGCGGCGACGACGACGACGACGAAGGCAAAAACAGAGCAGAACAGAGCTCCGGCGAAGAACGGAAAAACGGAGCAGAACAGAGTTTTGCGAAGCGGAAGTGTGTGTTTGATCGGGAAGTGGAAACGGAATCGGCGGTGTACGGTTGCCAGAATCAATGGTGCCCGCAGAGCACGGCGGCGATGGGATACGGCAACAAGAACACGAGAACAGAGCATGAGACGCAGTGCATTTACAGAGACGGCGGCGGCGGGGAGCAATTTCCCTACGAGGAATCGATCGATGCGCATTTGAAGAGCGTGTTGGAGTGGATGAATATGGAGCTGTTGAGGGCGGAGCCGAGCGGCAGCGACGACGGTGGAGATGGGTCCGGCGGCAGCACGGTGGAGGGTGACGGCGGTTGGTACTGGAACGGCGGCGATGGCGACGGCGTTTGA 1278 54.23 MVKFHGEIHDEQQQEDGEEEEEISYDDLKKRVWKDRQRLKKMKEKLETEEPESTTARAEEASCRKKAARAYDSILKYMEKIMEACNAKGFVYGIVPENGNPVTGTSESLREWWTDNARFEQTAPTAVAKFLPKVIEETGSDNESFLHLLQDLQDTTLGSMLSALLQHCIPPERKFPLEKGLAPPWWPTGREIWWGEQGAAGEHGVPPYKKPHDLKKVWKISVLAAVIKHMSPDLKNMRKLVRQSKNLQAKMTAKDTFTWAKVVNQEEALSLLTKEKLKITTGGDDDDDEGKNRAEQSSGEERKNGAEQSFAKRKCVFDREVETESAVYGCQNQWCPQSTAAMGYGNKNTRTEHETQCIYRDGGGGEQFPYEESIDAHLKSVLEWMNMELLRAEPSGSDDGGDGSGGSTVEGDGGWYWNGGDGDGV 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7066148 7067441 + Sed0008914.1 Sed13g0935 734445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0935 425 Pfam Ethylene insensitive 3, DNA-binding domain 26 267 IPR047091 GO:0003700(InterPro)
Sed13g0935 425 Gene3D - 138 276 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed13g0935 425 MobiDBLite consensus disorder prediction 392 425 - -
Sed13g0935 425 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 10 361 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Sed13g0935 425 Coils Coil 25 45 - -
Sed13g0935 425 FunFam Ethylene insensitive 3-like 1 140 277 - -
Sed13g0935 425 MobiDBLite consensus disorder prediction 1 25 - -
Sed13g0935 425 MobiDBLite consensus disorder prediction 279 309 - -
Sed13g0935 425 SUPERFAMILY DNA-binding domain of EIN3-like 146 269 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1623 Sed-Chr12:27273232 Sed13g0935 Sed-Chr13:7066148 2.30E-83 dispersed
Sed13g0935 Sed-Chr13:7066148 Sed07g1748 Sed-Chr7:17462282 2.90E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40396 PF04873 EIN3 4.00E-104 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0935 K14514 - csv:101210698 527.709