Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0946 ATGTTCCCACTGTTCCTTCTTCTTCTTCTTCTCGTCTTCTTCCACTCCCCGGCCGTTTCTCCGGCCAAACTCCGGTCAGATTACTACGCCCAATCATGCCCGCACGCCGAGTCCATCGTCCGGACTGTGATGCAGAAATCTCTCATCACAGAGCCTCGCAGCGTCGCTTCCGTCATGCGCTTCCAGTTCCACGATTGCTTCGTTAACGGCTGTGATGCTTCGATGTTGCTGGATGATACGCCGTCCATGCTCGGAGAGAAACTCGCCCTCTCCAACATCGATTCGCTCAGATCTTACGAAGTTGTTGATCGAGTCAAGGAGGCCTTGGAGAAGGCCTGTCCTGGAATCGTCTCCTGTGCGGATATCATAATCATGGCGTCTAGAGACGCCGTTGCTCTGACGGGCGGCCCCAACTGGGCAGTAAGATTAGGCAGGTTGGACAGCTTAACAGCAAGCCAAGAGGACTCGAACCAGATCATGCCAAGTCCAAGAGCCAATGCAAGCTCTCTCATTGCCCTCTTCAACAAATACAACCTCTCAGTTAAAGACCTGGTTTCTCTTTCGGGTTCGCACTCAATAGGCAAAGGGCGGTGTTTCTCCGTCATGTTTCGGCTCTACAACCAGTCTGGTACTGGGCGGCCGGACCCAGCCATCGAGCCGAGCTACAGAGAAGAGCTCTTCAAGCGATGCCCTCAAGGCGGGGATGAAAATGTCACAGTGAACCTCGACTCTACACCTCACATTTTCGACAATCAGTACTTCAAGAACTTGGTTGGTGGGAGGGGGTTCTTGAATTCTGATGAAACTCTTTACACATATGCTGAAACTAGAAGGTATGTGAGGCTCTTTAGCAAAAATGAAAGGGCATTTTTTAAGGCGTTTGTGGAGGGTATGTTGAAGATGGGTGACTTGCAGTCTGGCCGCCCTGGGGAAGTAAGAAGGAACTGTAGGGTAGTCAATGGCCAGTCTTCGATCATATAG 981 51.38 MFPLFLLLLLLVFFHSPAVSPAKLRSDYYAQSCPHAESIVRTVMQKSLITEPRSVASVMRFQFHDCFVNGCDASMLLDDTPSMLGEKLALSNIDSLRSYEVVDRVKEALEKACPGIVSCADIIIMASRDAVALTGGPNWAVRLGRLDSLTASQEDSNQIMPSPRANASSLIALFNKYNLSVKDLVSLSGSHSIGKGRCFSVMFRLYNQSGTGRPDPAIEPSYREELFKRCPQGGDENVTVNLDSTPHIFDNQYFKNLVGGRGFLNSDETLYTYAETRRYVRLFSKNERAFFKAFVEGMLKMGDLQSGRPGEVRRNCRVVNGQSSII 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7171090 7174376 + Sed0020507.1 Sed13g0946 734456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0946 326 CDD secretory_peroxidase 23 319 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed13g0946 326 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 SUPERFAMILY Heme-dependent peroxidases 24 320 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 Gene3D Peroxidase, domain 2 161 301 - -
Sed13g0946 326 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 ProSiteProfiles Plant heme peroxidase family profile. 23 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 Gene3D - 27 320 - -
Sed13g0946 326 PANTHER PEROXIDASE 72-RELATED 7 319 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 FunFam Peroxidase 161 301 - -
Sed13g0946 326 Pfam Peroxidase 40 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g0946 326 FunFam Peroxidase 27 169 - -
Sed13g0946 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0946 Sed-Chr13:7171090 Sed13g1017 Sed-Chr13:8299105 4.20E-76 dispersed
Sed13g0946 Sed-Chr13:7171090 Sed13g1016 Sed-Chr13:8275705 1.90E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0946 K00430 - csv:116406090 536.569