Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0949 ATGAAAATGATGTTAGTGAAGATGGGAAGACTCTATCTTACCACTCTAATTCTGGGTTGCTTTCATTATTTTGCACTGTCTGATTTTCAAGGTGAGGCACTCATTGAATTTAAGAATGCCTTGAAAGCAACACATAGTCAGCTCCCAAGTTGGACCGCAACTAATATCAATACATGCAGTAGTTGGTCCAATATTGTGTGTAATGGAAACAATGTGACTACTATATTCTTGCAAGCAATGGGATTCAATGGAACCTTGTCGAGCAGTATTGTTGTTCTACAATCTCTTTCGACCCTGAGATTGGAGGGAAATCACATAACTGGAGAGATACCAGAGGGTTTTGGAAACCTGAAAAATTTGGTCACTTTGAACCTGGAAAATAACAGCTTAGCTGGTCAAATACCATCATCCATGGGTAATCTTAAGAAACTACAGTTCCTAACTCTGAGTCAAAATCATCTAACTGGGACTATTCCTGAGACATTTTCAACCCTCACCAGCCTGATCAATCTTTCTCTTGATTCAAATGATCTCAGTGGCCAAATTCCAGAGCAGTTATTTCAAGTTTCAAAATTCAATTTTTCTGGAAATAAGTTGGATTGTGGCAAAAATTCTCATCGATCCTGTATTTCAGACAGTACAAACTCAGGTGTTTCAAAGAAGTCGATGGCTGGCCTTAAAGCTGGACTTATTGCTGGATTAATAGTTGCTCTTCTTTTGGTTGGATTTTTGTTTTTCTTGTGCAACTGTAGACATAACAAAGTTAACAACAAGGGTGAAGTCTTTGCAGATGTTCCTGGTGAAATTGATCAAAAAATTTCATTTGGTCAGCTGAAAAGATTTTCATGGAGGGAATTGCAGCTAGCTACAGAAGACTTTAGCGAGGAAAATGTTATAGGACAAGGAGGCTTTGGAAGGGTTTACAAAGGTGTGCTTACTGATGGCACCAAGGTTGCTGTGAAACAGTCAACTAATTACAAAAGCCCTGGTGAAGATGCTGCCTTTCTGCGTGAAGTTGAAATGATTAGTGTTGCTGTTCATAGAAATATATTGCGGCTGATTGGGTTTTGTACAACTGAGACTGAACGCTTATTGGTATATCCTTTTATGCAGAACTTAAGTGTTGCCTACCATCTTCGAGAACTTAAGCCTGAGGAACCTATTTTAGAATGGTCTACTCGTAAACGTGTGGCATTGGGCGCAGCTCGTGGTTTAGGATATCTTCATGAACATTGCAATCCAAAGATTATTCACCGAGATGTTAAGGCGGCTAATGTGTTGCTCGATGAAGAATTTGAAGCTGTAGTGGGTGATTTTGGCTTGGCAAAGTTGGTTGATGTTAGGAAGACTAATGTCACTACTCAAGTTCGGGGGACGGCTGGTCACATAGCACCGGAGTACTTATCCACGGGAAAATCATCAGAAAAGACCGACGTTTTTGGTTACGGCATTATGCTCTTAGAACTTGTTACAGGGCAACGTGCAATGGACTTATCACGCTTGGAAGGAGATGATGTATTACTGCTTGATCATGTCAAAAAATTGGTAAGGGAGAAGCGACTCAATGCTATTGTCGACGAAAACCTGAATAACTATGATATTCAAGAGGTTGAATTGATGACCCAAGTTGCTATACTGTGCACACAGCTGTCTTCGGTCGATCGACCAACAATGTCACAGGTCATTCGGATGCTGGAAGGCGAGGGGCTTGGAGAGAGGTGGGAAGAATGGCAGAATTTCGAGGTGACTCGCAAACAAGAATACGAGAGAATGCAAAGAAGGTTTGCTTTGGGGGATGATTCCACTTATAAACAGGAACCTATACAGTTGTCTGGTGGAAGATAA 1845 40.87 MKMMLVKMGRLYLTTLILGCFHYFALSDFQGEALIEFKNALKATHSQLPSWTATNINTCSSWSNIVCNGNNVTTIFLQAMGFNGTLSSSIVVLQSLSTLRLEGNHITGEIPEGFGNLKNLVTLNLENNSLAGQIPSSMGNLKKLQFLTLSQNHLTGTIPETFSTLTSLINLSLDSNDLSGQIPEQLFQVSKFNFSGNKLDCGKNSHRSCISDSTNSGVSKKSMAGLKAGLIAGLIVALLLVGFLFFLCNCRHNKVNNKGEVFADVPGEIDQKISFGQLKRFSWRELQLATEDFSEENVIGQGGFGRVYKGVLTDGTKVAVKQSTNYKSPGEDAAFLREVEMISVAVHRNILRLIGFCTTETERLLVYPFMQNLSVAYHLRELKPEEPILEWSTRKRVALGAARGLGYLHEHCNPKIIHRDVKAANVLLDEEFEAVVGDFGLAKLVDVRKTNVTTQVRGTAGHIAPEYLSTGKSSEKTDVFGYGIMLLELVTGQRAMDLSRLEGDDVLLLDHVKKLVREKRLNAIVDENLNNYDIQEVELMTQVAILCTQLSSVDRPTMSQVIRMLEGEGLGERWEEWQNFEVTRKQEYERMQRRFALGDDSTYKQEPIQLSGGR 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7181078 7189462 - Sed0023049.2 Sed13g0949 734459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0949 614 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 612 - -
Sed13g0949 614 Pfam Protein kinase domain 294 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0949 614 FunFam Somatic embryogenesis receptor-like kinase 1 370 585 - -
Sed13g0949 614 Gene3D Ribonuclease Inhibitor 28 211 IPR032675 -
Sed13g0949 614 SMART LRR_typ_2 165 189 IPR003591 -
Sed13g0949 614 SMART LRR_typ_2 117 140 IPR003591 -
Sed13g0949 614 SMART LRR_typ_2 93 116 IPR003591 -
Sed13g0949 614 SMART LRR_typ_2 141 164 IPR003591 -
Sed13g0949 614 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524(InterPro)
Sed13g0949 614 Gene3D Transferase(Phosphotransferase) domain 1 370 585 - -
Sed13g0949 614 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515(InterPro)
Sed13g0949 614 Gene3D Phosphorylase Kinase; domain 1 262 369 - -
Sed13g0949 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0949 614 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Sed13g0949 614 FunFam Leucine-rich repeat family protein 29 202 - -
Sed13g0949 614 SMART serkin_6 293 565 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0949 614 ProSiteProfiles Protein kinase domain profile. 293 570 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0949 614 SUPERFAMILY Protein kinase-like (PK-like) 270 566 IPR011009 -
Sed13g0949 614 FunFam Somatic embryogenesis receptor kinase 1 262 369 - -
Sed13g0949 614 SUPERFAMILY L domain-like 30 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1763 Sed-Chr7:17943920 Sed13g0949 Sed-Chr13:7181078 8.60E-198 dispersed
Sed13g0949 Sed-Chr13:7181078 Sed13g0980 Sed-Chr13:7562481 6.40E-118 dispersed
Sed13g0948 Sed-Chr13:7181078 Sed13g0949 Sed-Chr13:7181078 2.40E-298 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80088 PF00069 Pkinase 1.90E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0949 - - - 0.0