Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0960 ATGATCATGGGACGAGTTAAGTTGCAGATTAAGAGAATCGAAAACAACACGAATCGACAAGTCACCTTCTCGAAACGTCGAAATGGACTCATCAAAAAAGCTTACGAACTCTCCATTCTATGCGACATCGATATTGCTCTTATCATGTTCTCTCCTTCCGGGCGCCTCAGTCATTTCTCGGGCCGCCGGAGAATTGAGGATGTACTTGCTCGTTACATAAATTTGCCTGATCATGATCGAGGAAGCGTGGTTCAGAATAAAGAGTTCTTACTTGGAACATTAAATAATGTGAGGACGGAGAATGATATTGCCCTTCAACTTGCCAATCCTACATCAAGCAATTCCAATGTTGAGGAACTTCAACAAGAGATTGTTACATTGAGACATCAGCTTCAACTTGCAGAGCAGGAGCTCAGATTATTCGAACCTGATCCTCTTTCATTCACATCAAATGGTGAAATAGAATCGTGTGAGAAGAACCTTCTAGACGTTTTGGCTCGTATCACTCAGAAGAAGAAAGATCTATTAAGTAATCATTTATCTCCTTATGAAACTGCAAATCAACTTCAGATGTATTTGGAATCACAAGAAGGAATGCCAACATCTTTTGATAATGATGTTGCTAATTGGATGCCTGAAAATGGCCAAAATCCGACCCAAAATTGTGTTACGTCCGAATCATCTTCAATTCCTCAAAGTGGTCACTATCCAACCACAGTTTATGATCAAGTAAACCAAGCAAGCAACATGAACGTCGGGTCATGCAACATTGGTGGCTACGAGCTCGCAAACCCGAATGACGATGGCTACCCTTCTTGGTCCAACAACTTCACTGCAACTCAGCTCCTCTCGGCCTCTTTCAACCCACAAACCTCATTTCATGACATTGTAAAGAATGAAAATATTGGAGGGCCTTGTATGAATACAATGATGTCACAACAGCAAATTGATACAGTTTCGAACGGGAACCAAATGCCTCCGAGTGATGGAAGTGCCAATTATGACGATCGCAAGTTGCCTCAACTTGATTAA 1032 41.57 MIMGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNVRTENDIALQLANPTSSNSNVEELQQEIVTLRHQLQLAEQELRLFEPDPLSFTSNGEIESCEKNLLDVLARITQKKKDLLSNHLSPYETANQLQMYLESQEGMPTSFDNDVANWMPENGQNPTQNCVTSESSSIPQSGHYPTTVYDQVNQASNMNVGSCNIGGYELANPNDDGYPSWSNNFTATQLLSASFNPQTSFHDIVKNENIGGPCMNTMMSQQQIDTVSNGNQMPPSDGSANYDDRKLPQLD 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7365479 7370524 - Sed0009551.1 Sed13g0960 734470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0960 343 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0960 343 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0960 343 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0960 343 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0960 343 Coils Coil 117 137 - -
Sed13g0960 343 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 229 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed13g0960 343 FunFam MADS-box transcription factor 41 15 93 - -
Sed13g0960 343 ProSitePatterns MADS-box domain signature. 5 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0960 343 MobiDBLite consensus disorder prediction 318 343 - -
Sed13g0960 343 CDD MADS_MEF2_like 4 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed13g0960 343 Gene3D - 15 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0960 343 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0960 343 SMART madsneu2 3 62 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0960 343 SUPERFAMILY SRF-like 4 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1935 Sed-Chr7:33886834 Sed13g0960 Sed-Chr13:7365479 1.00E-24 dispersed
Sed13g0960 Sed-Chr13:7365479 Sed10g2121 Sed-Chr10:37691019 6.30E-22 dispersed
Sed13g0960 Sed-Chr13:7365479 Sed06g1516 Sed-Chr6:39839151 3.50E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40397 PF00319 SRF-TF 1.10E-25 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0960 - - - 0.0