Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g0960 | ATGATCATGGGACGAGTTAAGTTGCAGATTAAGAGAATCGAAAACAACACGAATCGACAAGTCACCTTCTCGAAACGTCGAAATGGACTCATCAAAAAAGCTTACGAACTCTCCATTCTATGCGACATCGATATTGCTCTTATCATGTTCTCTCCTTCCGGGCGCCTCAGTCATTTCTCGGGCCGCCGGAGAATTGAGGATGTACTTGCTCGTTACATAAATTTGCCTGATCATGATCGAGGAAGCGTGGTTCAGAATAAAGAGTTCTTACTTGGAACATTAAATAATGTGAGGACGGAGAATGATATTGCCCTTCAACTTGCCAATCCTACATCAAGCAATTCCAATGTTGAGGAACTTCAACAAGAGATTGTTACATTGAGACATCAGCTTCAACTTGCAGAGCAGGAGCTCAGATTATTCGAACCTGATCCTCTTTCATTCACATCAAATGGTGAAATAGAATCGTGTGAGAAGAACCTTCTAGACGTTTTGGCTCGTATCACTCAGAAGAAGAAAGATCTATTAAGTAATCATTTATCTCCTTATGAAACTGCAAATCAACTTCAGATGTATTTGGAATCACAAGAAGGAATGCCAACATCTTTTGATAATGATGTTGCTAATTGGATGCCTGAAAATGGCCAAAATCCGACCCAAAATTGTGTTACGTCCGAATCATCTTCAATTCCTCAAAGTGGTCACTATCCAACCACAGTTTATGATCAAGTAAACCAAGCAAGCAACATGAACGTCGGGTCATGCAACATTGGTGGCTACGAGCTCGCAAACCCGAATGACGATGGCTACCCTTCTTGGTCCAACAACTTCACTGCAACTCAGCTCCTCTCGGCCTCTTTCAACCCACAAACCTCATTTCATGACATTGTAAAGAATGAAAATATTGGAGGGCCTTGTATGAATACAATGATGTCACAACAGCAAATTGATACAGTTTCGAACGGGAACCAAATGCCTCCGAGTGATGGAAGTGCCAATTATGACGATCGCAAGTTGCCTCAACTTGATTAA | 1032 | 41.57 | MIMGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNVRTENDIALQLANPTSSNSNVEELQQEIVTLRHQLQLAEQELRLFEPDPLSFTSNGEIESCEKNLLDVLARITQKKKDLLSNHLSPYETANQLQMYLESQEGMPTSFDNDVANWMPENGQNPTQNCVTSESSSIPQSGHYPTTVYDQVNQASNMNVGSCNIGGYELANPNDDGYPSWSNNFTATQLLSASFNPQTSFHDIVKNENIGGPCMNTMMSQQQIDTVSNGNQMPPSDGSANYDDRKLPQLD | 343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 7365479 | 7370524 | - | Sed0009551.1 | Sed13g0960 | 734470 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g0960 | 343 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 12 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed13g0960 | 343 | PRINTS | MADS domain signature | 25 | 40 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed13g0960 | 343 | PRINTS | MADS domain signature | 40 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed13g0960 | 343 | PRINTS | MADS domain signature | 5 | 25 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed13g0960 | 343 | Coils | Coil | 117 | 137 | - | - | |
Sed13g0960 | 343 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 229 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed13g0960 | 343 | FunFam | MADS-box transcription factor 41 | 15 | 93 | - | - | |
Sed13g0960 | 343 | ProSitePatterns | MADS-box domain signature. | 5 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed13g0960 | 343 | MobiDBLite | consensus disorder prediction | 318 | 343 | - | - | |
Sed13g0960 | 343 | CDD | MADS_MEF2_like | 4 | 77 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Sed13g0960 | 343 | Gene3D | - | 15 | 92 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed13g0960 | 343 | ProSiteProfiles | MADS-box domain profile. | 3 | 63 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed13g0960 | 343 | SMART | madsneu2 | 3 | 62 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed13g0960 | 343 | SUPERFAMILY | SRF-like | 4 | 83 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g1935 | Sed-Chr7:33886834 | Sed13g0960 | Sed-Chr13:7365479 | 1.00E-24 | dispersed | |
Sed13g0960 | Sed-Chr13:7365479 | Sed10g2121 | Sed-Chr10:37691019 | 6.30E-22 | dispersed | |
Sed13g0960 | Sed-Chr13:7365479 | Sed06g1516 | Sed-Chr6:39839151 | 3.50E-25 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40397 | PF00319 | SRF-TF | 1.10E-25 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g0960 | - | - | - | 0.0 |