Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0960 ATGATCATGGGACGAGTTAAGTTGCAGATTAAGAGAATCGAAAACAACACGAATCGACAAGTCACCTTCTCGAAACGTCGAAATGGACTCATCAAAAAAGCTTACGAACTCTCCATTCTATGCGACATCGATATTGCTCTTATCATGTTCTCTCCTTCCGGGCGCCTCAGTCATTTCTCGGGCCGCCGGAGAATTGAGGATGTACTTGCTCGTTACATAAATTTGCCTGATCATGATCGAGGAAGCGTGGTTCAGAATAAAGAGTTCTTACTTGGAACATTAAATAATGTGAGGACGGAGAATGATATTGCCCTTCAACTTGCCAATCCTACATCAAGCAATTCCAATGTTGAGGAACTTCAACAAGAGATTGTTACATTGAGACATCAGCTTCAACTTGCAGAGCAGGAGCTCAGATTATTCGAACCTGATCCTCTTTCATTCACATCAAATGGTGAAATAGAATCGTGTGAGAAGAACCTTCTAGACGTTTTGGCTCGTATCACTCAGAAGAAGAAAGATCTATTAAGTAATCATTTATCTCCTTATGAAACTGCAAATCAACTTCAGATGTATTTGGAATCACAAGAAGGAATGCCAACATCTTTTGATAATGATGTTGCTAATTGGATGCCTGAAAATGGCCAAAATCCGACCCAAAATTGTGTTACGTCCGAATCATCTTCAATTCCTCAAAGTGGTCACTATCCAACCACAGTTTATGATCAAGTAAACCAAGCAAGCAACATGAACGTCGGGTCATGCAACATTGGTGGCTACGAGCTCGCAAACCCGAATGACGATGGCTACCCTTCTTGGTCCAACAACTTCACTGCAACTCAGCTCCTCTCGGCCTCTTTCAACCCACAAACCTCATTTCATGACATTGTAAAGAATGAAAATATTGGAGGGCCTTGTATGAATACAATGATGTCACAACAGCAAATTGATACAGTTTCGAACGGGAACCAAATGCCTCCGAGTGATGGAAGTGCCAATTATGACGATCGCAAGTTGCCTCAACTTGATTAA 1032 41.57 MIMGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNVRTENDIALQLANPTSSNSNVEELQQEIVTLRHQLQLAEQELRLFEPDPLSFTSNGEIESCEKNLLDVLARITQKKKDLLSNHLSPYETANQLQMYLESQEGMPTSFDNDVANWMPENGQNPTQNCVTSESSSIPQSGHYPTTVYDQVNQASNMNVGSCNIGGYELANPNDDGYPSWSNNFTATQLLSASFNPQTSFHDIVKNENIGGPCMNTMMSQQQIDTVSNGNQMPPSDGSANYDDRKLPQLD 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7365479 7370524 - Sed0009551.1 Sed13g0960 734470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0960 343 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0960 343 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0960 343 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0960 343 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0960 343 Coils Coil 117 137 - -
Sed13g0960 343 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 229 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed13g0960 343 FunFam MADS-box transcription factor 41 15 93 - -
Sed13g0960 343 ProSitePatterns MADS-box domain signature. 5 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0960 343 MobiDBLite consensus disorder prediction 318 343 - -
Sed13g0960 343 CDD MADS_MEF2_like 4 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed13g0960 343 Gene3D - 15 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0960 343 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0960 343 SMART madsneu2 3 62 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0960 343 SUPERFAMILY SRF-like 4 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0960 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1935 Sed-Chr7:33886834 Sed13g0960 Sed-Chr13:7365479 1.00E-24 dispersed
Sed13g0960 Sed-Chr13:7365479 Sed10g2121 Sed-Chr10:37691019 6.30E-22 dispersed
Sed13g0960 Sed-Chr13:7365479 Sed06g1516 Sed-Chr6:39839151 3.50E-25 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g1935 . 1 315 Type I MADS-box Gene Family AT2G03060 52.2 4.7e-87 319.3
Sed13g0413 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 7.0e-37 152.1
Sed13g0413 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 4.8e-50 196.1
Sed07g1151 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.3e-49 192.6
Sed13g0960 . 3 213 Type I MADS-box Gene Family AT1G77950 52.7 3.0e-53 206.5
Sed04g0389 . 1 162 Type I MADS-box Gene Family AT5G48670 65.4 1.2e-54 211.5
Sed08g1920 . 1 157 Type I MADS-box Gene Family AT5G48670 61.1 5.6e-49 192.6
Sed07g1935 . 1 315 Type I MADS-box Gene Family AT2G03060 52.2 4.7e-87 319.3
Sed13g0413 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 7.0e-37 152.1
Sed13g0413 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 4.8e-50 196.1
Sed07g1151 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.3e-49 192.6
Sed13g0960 . 3 213 Type I MADS-box Gene Family AT1G77950 52.7 3.0e-53 206.5
Sed04g0389 . 1 162 Type I MADS-box Gene Family AT5G48670 65.4 1.2e-54 211.5
Sed08g1920 . 1 157 Type I MADS-box Gene Family AT5G48670 61.1 5.6e-49 192.6
Sed07g1935 . 1 315 Type I MADS-box Gene Family AT2G03060 52.2 4.7e-87 319.3
Sed13g0413 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 4.8e-50 196.1
Sed07g1151 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.3e-49 192.6
Sed04g0389 . 1 162 Type I MADS-box Gene Family AT5G48670 65.4 1.2e-54 211.5
Sed08g1920 . 1 157 Type I MADS-box Gene Family AT5G48670 61.1 5.6e-49 192.6
Sed13g0413 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 7.0e-37 152.1
Sed13g0960 . 3 213 Type I MADS-box Gene Family AT1G77950 52.7 3.0e-53 206.5
Sed07g1935 . 1 315 Type I MADS-box Gene Family AT2G03060 52.2 4.7e-87 319.3
Sed13g0413 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 4.8e-50 196.1
Sed07g1151 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.3e-49 192.6
Sed04g0389 . 1 162 Type I MADS-box Gene Family AT5G48670 65.4 1.2e-54 211.5
Sed08g1920 . 1 157 Type I MADS-box Gene Family AT5G48670 61.1 5.6e-49 192.6
Sed13g0413 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 7.0e-37 152.1
Sed13g0960 . 3 213 Type I MADS-box Gene Family AT1G77950 52.7 3.0e-53 206.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40397 PF00319 SRF-TF 1.10E-25 No_clan Sed TF