Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g0972 | ATGAACTCATCATCCACTAAATTTTACAATCCAGGAAGGATGGGATTGTATGAACCTATTTACCCACTTGGAATGTGGGGAGAAACTTTTAGAAGTCATGCCAATTTAGATGCATCAACCTCGTTTATTATAGACCACGATACGAAGTTAGAAAATCAGTCAGATGATGTTTCGATTGATTCATTAGGAAATCCCCACATATGTGACCAAGAAGATAGCAAACGTATCGATAAGATTCAAAGGCGGCTCGCTCAGAATCGAGAAGCAGCTCGCAAAAGTCGCATACGAAAGAAGGCCTATATCAAGCAATTGGAAACGAGCCGTTTGAAACTGGTTCAATTAGAGCAAGAGCTTGTCAAAGCAAGACAACAAGGTCTGTTTGCTGGATCTCGATCAGATGATAACCAGTTGGGTTTCTCTGCAACCAAGAATTCAGCCATCTCTGCATTTGAATCAGAGTACGAGCTATGGGTAGAAGAACAGAACAGACAGATTTGTGATCTGAGGACTGCTGTGCATGCTGATATCACTGATATCGAGCTTCGAATACTCGTAGAAAATGCAATGAGACACTACTTTACATTTTTTCGCATGAAAGCTAAAGCTGCAAAAGCCGATGTCTCCTACATGATGTCAGGCATGTGGAAAACATCAGCCGAAAGACTTTTCTTATGGATAGGAGGATTTCGCCCTTCGGAACTTCTCAAGGTTTTGATACCTCAACTGAAAACGCTGACCGATCAACAAATTTCGGATACTGGTAGCCTTAGGAAATCATGTCTACAAGCAGAAGATGCTTTAAGACAGGGGATGGAGAAGCTACAACAAAATCTATTCGAGAGCGTAGTGGCGGGTCAACTGAGCGAAGGAAGTTGCCCTCTACAGATGACTGCTGCCATGGAGAGTTTAGAAGCTCTCATTAGCTTTGTAAACCAGGCTGACCATCTTCGACAGGAAACATTGCAACAGATGTACAAAATTCTTACAACTCGGCAATCTGCTCAAGGTCTTCTTATTCTAGGTGAGTTTTTCCAACGACTCCGAGCATTGAGCTCGCTTTGGACGAACCGTCCTTGTGAGCCTGCATAG | 1089 | 42.88 | MNSSSTKFYNPGRMGLYEPIYPLGMWGETFRSHANLDASTSFIIDHDTKLENQSDDVSIDSLGNPHICDQEDSKRIDKIQRRLAQNREAARKSRIRKKAYIKQLETSRLKLVQLEQELVKARQQGLFAGSRSDDNQLGFSATKNSAISAFESEYELWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFTFFRMKAKAAKADVSYMMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLKTLTDQQISDTGSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLSEGSCPLQMTAAMESLEALISFVNQADHLRQETLQQMYKILTTRQSAQGLLILGEFFQRLRALSSLWTNRPCEPA | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 7517364 | 7526668 | + | Sed0003829.1 | Sed13g0972 | 734482 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g0972 | 362 | SUPERFAMILY | Leucine zipper domain | 78 | 120 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g0972 | 362 | ProSiteProfiles | DOG1 domain profile. | 147 | 357 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed13g0972 | 362 | Pfam | Seed dormancy control | 164 | 239 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed13g0972 | 362 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 2 | 361 | - | - | |
Sed13g0972 | 362 | Coils | Coil | 97 | 124 | - | - | |
Sed13g0972 | 362 | Pfam | bZIP transcription factor | 77 | 118 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g0972 | 362 | FunFam | BZIP family transcription factor | 77 | 126 | - | - | |
Sed13g0972 | 362 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 76 | 118 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g0972 | 362 | SMART | brlzneu | 74 | 152 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g0972 | 362 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 81 | 96 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g0972 | 362 | Gene3D | - | 77 | 126 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g1713 | Sed-Chr7:15745639 | Sed13g0972 | Sed-Chr13:7517364 | 9.60E-134 | dispersed | |
Sed07g1714 | Sed-Chr7:15745639 | Sed13g0972 | Sed-Chr13:7517364 | 8.60E-141 | dispersed | |
Sed11g2303 | Sed-Chr11:36090263 | Sed13g0972 | Sed-Chr13:7517364 | 2.20E-57 | dispersed | |
Sed11g2304 | Sed-Chr11:36090263 | Sed13g0972 | Sed-Chr13:7517364 | 3.90E-91 | dispersed | |
Sed12g1268 | Sed-Chr12:9165658 | Sed13g0972 | Sed-Chr13:7517364 | 5.70E-64 | dispersed | |
Sed12g1269 | Sed-Chr12:9165658 | Sed13g0972 | Sed-Chr13:7517364 | 5.40E-64 | dispersed | |
Sed13g0972 | Sed-Chr13:7517364 | Sed13g0975 | Sed-Chr13:7517364 | 1.50E-196 | dispersed | |
Sed13g0972 | Sed-Chr13:7517364 | Sed13g0973 | Sed-Chr13:7517364 | 2.10E-193 | tandem | |
Sed13g0972 | Sed-Chr13:7517364 | Sed07g1708 | Sed-Chr7:15745639 | 2.30E-168 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40398 | PF14144 | DOG1 | 1.60E-28 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g0972 | K14431 | - | csv:116401613 | 632.484 |