Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0972 ATGAACTCATCATCCACTAAATTTTACAATCCAGGAAGGATGGGATTGTATGAACCTATTTACCCACTTGGAATGTGGGGAGAAACTTTTAGAAGTCATGCCAATTTAGATGCATCAACCTCGTTTATTATAGACCACGATACGAAGTTAGAAAATCAGTCAGATGATGTTTCGATTGATTCATTAGGAAATCCCCACATATGTGACCAAGAAGATAGCAAACGTATCGATAAGATTCAAAGGCGGCTCGCTCAGAATCGAGAAGCAGCTCGCAAAAGTCGCATACGAAAGAAGGCCTATATCAAGCAATTGGAAACGAGCCGTTTGAAACTGGTTCAATTAGAGCAAGAGCTTGTCAAAGCAAGACAACAAGGTCTGTTTGCTGGATCTCGATCAGATGATAACCAGTTGGGTTTCTCTGCAACCAAGAATTCAGCCATCTCTGCATTTGAATCAGAGTACGAGCTATGGGTAGAAGAACAGAACAGACAGATTTGTGATCTGAGGACTGCTGTGCATGCTGATATCACTGATATCGAGCTTCGAATACTCGTAGAAAATGCAATGAGACACTACTTTACATTTTTTCGCATGAAAGCTAAAGCTGCAAAAGCCGATGTCTCCTACATGATGTCAGGCATGTGGAAAACATCAGCCGAAAGACTTTTCTTATGGATAGGAGGATTTCGCCCTTCGGAACTTCTCAAGGTTTTGATACCTCAACTGAAAACGCTGACCGATCAACAAATTTCGGATACTGGTAGCCTTAGGAAATCATGTCTACAAGCAGAAGATGCTTTAAGACAGGGGATGGAGAAGCTACAACAAAATCTATTCGAGAGCGTAGTGGCGGGTCAACTGAGCGAAGGAAGTTGCCCTCTACAGATGACTGCTGCCATGGAGAGTTTAGAAGCTCTCATTAGCTTTGTAAACCAGGCTGACCATCTTCGACAGGAAACATTGCAACAGATGTACAAAATTCTTACAACTCGGCAATCTGCTCAAGGTCTTCTTATTCTAGGTGAGTTTTTCCAACGACTCCGAGCATTGAGCTCGCTTTGGACGAACCGTCCTTGTGAGCCTGCATAG 1089 42.88 MNSSSTKFYNPGRMGLYEPIYPLGMWGETFRSHANLDASTSFIIDHDTKLENQSDDVSIDSLGNPHICDQEDSKRIDKIQRRLAQNREAARKSRIRKKAYIKQLETSRLKLVQLEQELVKARQQGLFAGSRSDDNQLGFSATKNSAISAFESEYELWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFTFFRMKAKAAKADVSYMMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLKTLTDQQISDTGSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLSEGSCPLQMTAAMESLEALISFVNQADHLRQETLQQMYKILTTRQSAQGLLILGEFFQRLRALSSLWTNRPCEPA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7517364 7526668 + Sed0003829.1 Sed13g0972 734482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0972 362 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0972 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed13g0972 362 Pfam Seed dormancy control 164 239 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed13g0972 362 PANTHER TRANSCRIPTION FACTOR TGA9 2 361 - -
Sed13g0972 362 Coils Coil 97 124 - -
Sed13g0972 362 Pfam bZIP transcription factor 77 118 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0972 362 FunFam BZIP family transcription factor 77 126 - -
Sed13g0972 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 118 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0972 362 SMART brlzneu 74 152 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0972 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0972 362 Gene3D - 77 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1713 Sed-Chr7:15745639 Sed13g0972 Sed-Chr13:7517364 9.60E-134 dispersed
Sed07g1714 Sed-Chr7:15745639 Sed13g0972 Sed-Chr13:7517364 8.60E-141 dispersed
Sed11g2303 Sed-Chr11:36090263 Sed13g0972 Sed-Chr13:7517364 2.20E-57 dispersed
Sed11g2304 Sed-Chr11:36090263 Sed13g0972 Sed-Chr13:7517364 3.90E-91 dispersed
Sed12g1268 Sed-Chr12:9165658 Sed13g0972 Sed-Chr13:7517364 5.70E-64 dispersed
Sed12g1269 Sed-Chr12:9165658 Sed13g0972 Sed-Chr13:7517364 5.40E-64 dispersed
Sed13g0972 Sed-Chr13:7517364 Sed13g0975 Sed-Chr13:7517364 1.50E-196 dispersed
Sed13g0972 Sed-Chr13:7517364 Sed13g0973 Sed-Chr13:7517364 2.10E-193 tandem
Sed13g0972 Sed-Chr13:7517364 Sed07g1708 Sed-Chr7:15745639 2.30E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40398 PF14144 DOG1 1.60E-28 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0972 K14431 - csv:116401613 632.484