Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0973 ATGAACTCATCATCCACTAAATTTTACAATCCAGGAAGGATGGGATTGTATGAACCTATTTACCCACTTGGAATGTGGGGAGAAACTTTTAGAAGTCATGCCAATTTAGATGCATCAACCTCGTTTATTATAGACCACGATACGAAGTTAGAAAATCAGTCAGATGATGTTTCGATTGATTCATTAGGAAATCCCCACATATGTGACCAAGAAGATAGCAAACGTATCGATAAGATTCAAAGGCGGCTCGCTCAGAATCGAGAAGCAGCTCGCAAAAGTCGCATACGAAAGAAGGCCTATATCAAGCAATTGGAAACGAGCCGTTTGAAACTGGTTCAATTAGAGCAAGAGCTTGTCAAAGCAAGACAACAAGGTCTGTTTGCTGGATCTCGATCAGATGATAACCAGTTGGGTTTCTCTGCAACCAAGAATTCAGCCATCTCTGCATTTGAATCAGAGTACGAGCTATGGGTAGAAGAACAGAACAGACAGATTTGTGATCTGAGGACTGCTGTGCATGCTGATATCACTGATATCGAGCTTCGAATACTCGTAGAAAATGCAATGAGACACTACTTTACATTTTTTCGCATGAAAGCTAAAGCTGCAAAAGCCGATGTCTCCTACATGATGTCAGGCATGTGGAAAACATCAGCCGAAAGACTTTTCTTATGGATAGGAGGATTTCGCCCTTCGGAACTTCTCAAGGTTTTGATACCTCAACTGAAAACGCTGACCGATCAACAAATTTCGGATACTGGTAGCCTTAGGAAATCATGTCTACAAGCAGAAGATGCTTTAAGACAGGGGATGGAGAAGCTACAACAAAATCTATTCGAGAGCGTAGTGGCGGGTCAACTGAGCGAAGGAAGTTGCCCTCTACAGATGACTGCTGCCATGGAGAGTTTAGAAGCTCTCATTAGCTTTGTAAACCAGATGTACAAAATTCTTACAACTCGGCAATCTGCTCAAGGTCTTCTTATTCTAGGTGAGTTTTTCCAACGACTCCGAGCATTGAGCTCGCTTTGGACGAACCGTCCTTGTGAGCCTGCATAG 1056 42.71 MNSSSTKFYNPGRMGLYEPIYPLGMWGETFRSHANLDASTSFIIDHDTKLENQSDDVSIDSLGNPHICDQEDSKRIDKIQRRLAQNREAARKSRIRKKAYIKQLETSRLKLVQLEQELVKARQQGLFAGSRSDDNQLGFSATKNSAISAFESEYELWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFTFFRMKAKAAKADVSYMMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLKTLTDQQISDTGSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLSEGSCPLQMTAAMESLEALISFVNQMYKILTTRQSAQGLLILGEFFQRLRALSSLWTNRPCEPA 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7517364 7526668 + Sed0003829.2 Sed13g0973 734483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0973 351 ProSiteProfiles DOG1 domain profile. 147 346 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed13g0973 351 Gene3D - 77 126 - -
Sed13g0973 351 Coils Coil 97 124 - -
Sed13g0973 351 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 118 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0973 351 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0973 351 FunFam BZIP family transcription factor 77 126 - -
Sed13g0973 351 PANTHER TRANSCRIPTION FACTOR TGA9 2 350 - -
Sed13g0973 351 SMART brlzneu 74 152 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0973 351 Pfam bZIP transcription factor 77 118 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0973 351 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0973 351 Pfam Seed dormancy control 164 239 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0973 Sed-Chr13:7517364 Sed13g0975 Sed-Chr13:7517364 3.10E-194 dispersed
Sed13g0972 Sed-Chr13:7517364 Sed13g0973 Sed-Chr13:7517364 2.10E-193 tandem
Sed13g0973 Sed-Chr13:7517364 Sed13g0974 Sed-Chr13:7517364 3.50E-185 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40399 PF14144 DOG1 1.50E-28 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0973 K14431 - csv:116401613 602.438