Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0974 ATGGGATTGTATGAACCTATTTACCCACTTGGAATGTGGGGAGAAACTTTTAGAAGTCATGCCAATTTAGATGCATCAACCTCGTTTATTATAGACCACGATACGAAGTTAGAAAATCAGTCAGATGATGTTTCGATTGATTCATTAGGAAATCCCCACATATGTGACCAAGAAGATAGCAAACGTATCGATAAGATTCAAAGGCGGCTCGCTCAGAATCGAGAAGCAGCTCGCAAAAGTCGCATACGAAAGAAGGCCTATATCAAGCAATTGGAAACGAGCCGTTTGAAACTGGTTCAATTAGAGCAAGAGCTTGTCAAAGCAAGACAACAAGGTCTGTTTGCTGGATCTCGATCAGATGATAACCAGTTGGGTTTCTCTGCAACCAAGAATTCAGCCATCTCTGCATTTGAATCAGAGTACGAGCTATGGGTAGAAGAACAGAACAGACAGATTTGTGATCTGAGGACTGCTGTGCATGCTGATATCACTGATATCGAGCTTCGAATACTCGTAGAAAATGCAATGAGACACTACTTTACATTTTTTCGCATGAAAGCTAAAGCTGCAAAAGCCGATGTCTCCTACATGATGTCAGGCATGTGGAAAACATCAGCCGAAAGACTTTTCTTATGGATAGGAGGATTTCGCCCTTCGGAACTTCTCAAGGTTTTGATACCTCAACTGAAAACGCTGACCGATCAACAAATTTCGGATACTGGTAGCCTTAGGAAATCATGTCTACAAGCAGAAGATGCTTTAAGACAGGGGATGGAGAAGCTACAACAAAATCTATTCGAGAGCGTAGTGGCGGGTCAACTGAGCGAAGGAAGTTGCCCTCTACAGATGACTGCTGCCATGGAGAGTTTAGAAGCTCTCATTAGCTTTGTAAACCAGGCTGACCATCTTCGACAGGAAACATTGCAACAGATGTACAAAATTCTTACAACTCGGCAATCTGCTCAAGGTCTTCTTATTCTAGGTGAGTTTTTCCAACGACTCCGAGCATTGAGCTCGCTTTGGACGAACCGTCCTTGTGAGCCTGCATAG 1050 43.14 MGLYEPIYPLGMWGETFRSHANLDASTSFIIDHDTKLENQSDDVSIDSLGNPHICDQEDSKRIDKIQRRLAQNREAARKSRIRKKAYIKQLETSRLKLVQLEQELVKARQQGLFAGSRSDDNQLGFSATKNSAISAFESEYELWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFTFFRMKAKAAKADVSYMMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLKTLTDQQISDTGSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLSEGSCPLQMTAAMESLEALISFVNQADHLRQETLQQMYKILTTRQSAQGLLILGEFFQRLRALSSLWTNRPCEPA 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7517364 7526668 + Sed0003829.3 Sed13g0974 734484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0974 349 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 68 83 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0974 349 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 63 105 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0974 349 FunFam BZIP family transcription factor 64 113 - -
Sed13g0974 349 Gene3D - 64 113 - -
Sed13g0974 349 SUPERFAMILY Leucine zipper domain 65 107 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0974 349 Pfam bZIP transcription factor 64 105 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0974 349 ProSiteProfiles DOG1 domain profile. 134 344 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed13g0974 349 Coils Coil 84 111 - -
Sed13g0974 349 PANTHER TRANSCRIPTION FACTOR TGA9 42 348 - -
Sed13g0974 349 Pfam Seed dormancy control 151 226 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed13g0974 349 SMART brlzneu 61 139 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0974 Sed-Chr13:7517364 Sed13g0976 Sed-Chr13:7517364 1.10E-122 dispersed
Sed13g0973 Sed-Chr13:7517364 Sed13g0974 Sed-Chr13:7517364 3.50E-185 tandem
Sed13g0974 Sed-Chr13:7517364 Sed13g0975 Sed-Chr13:7517364 2.50E-188 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40400 PF14144 DOG1 1.50E-28 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0974 K14431 - csv:116401613 605.52