Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0975 ATGAACTCATCATCCACTAAATTTTACAATCCAGGAAGGATGGGATTGTATGAACCTATTTACCCACTTGGAATGTGGGGAGAAACTTTTAGAAGTCATGCCAATTTAGATGCATCAACCTCGTTTATTATAGACCACGATACGAAGTTAGAAAATCAGTCAGATGATGTTTCGATTGATTCATTAGGAAATCCCCACATATGTGACCAAGAAGATAGCAAACGTATCGATAAGATTCAAAGGCGGCTCGCTCAGAATCGAGAAGCAGCTCGCAAAAGTCGCATACGAAAGAAGGCCTATATCAAGCAATTGGAAACGAGCCGTTTGAAACTGGTTCAATTAGAGCAAGAGCTTGTCAAAGCAAGACAACAAGGTCTGTTTGCTGGATCTCGATCAGATGATAACCAGTTGGGTTTCTCTGCAACCAAGAATTCAGCCATCTCTGCATTTGAATCAGAGTACGAGCTATGGGTAGAAGAACAGAACAGACAGATTTGTGATCTGAGGACTGCTGTGCATGCTGATATCACTGATATCGAGCTTCGAATACTCGTAGAAAATGCAATGAGACACTACTTTACATTTTTTCGCATGAAAGCTAAAGCTGCAAAAGCCGATGTCTCCTACATGATGTCAGGCATGTGGAAAACATCAGCCGAAAGACTTTTCTTATGGATAGGAGGATTTCGCCCTTCGGAACTTCTCAAGGTTTTGATACCTCAACTGAAAACGCTGACCGATCAACAAATTTCGGATACTGGTAGCCTTAGGAAATCATGTCTACAAGCAGAAGATGCTTTAAGACAGGGGATGGAGAAGCTACAACAAAATCTATTCGAGAGCGTAGTGGCGGGTCAACTGAGCGAAGGAAGTTGCCCTCTACAGATGACTGCTGCCATGGAGAGTTTAGAAGCTCTCATTAGCTTTGTAAACCAGGAAACATTGCAACAGATGTACAAAATTCTTACAACTCGGCAATCTGCTCAAGGTCTTCTTATTCTAGGTGAGTTTTTCCAACGACTCCGAGCATTGAGCTCGCTTTGGACGAACCGTCCTTGTGAGCCTGCATAG 1071 42.67 MNSSSTKFYNPGRMGLYEPIYPLGMWGETFRSHANLDASTSFIIDHDTKLENQSDDVSIDSLGNPHICDQEDSKRIDKIQRRLAQNREAARKSRIRKKAYIKQLETSRLKLVQLEQELVKARQQGLFAGSRSDDNQLGFSATKNSAISAFESEYELWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFTFFRMKAKAAKADVSYMMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLKTLTDQQISDTGSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLSEGSCPLQMTAAMESLEALISFVNQETLQQMYKILTTRQSAQGLLILGEFFQRLRALSSLWTNRPCEPA 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7517364 7526668 + Sed0003829.4 Sed13g0975 734485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0975 356 Pfam bZIP transcription factor 77 118 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0975 356 Pfam Seed dormancy control 164 239 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed13g0975 356 ProSiteProfiles DOG1 domain profile. 147 351 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed13g0975 356 Coils Coil 97 124 - -
Sed13g0975 356 Gene3D - 77 126 - -
Sed13g0975 356 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 118 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0975 356 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0975 356 FunFam BZIP family transcription factor 77 126 - -
Sed13g0975 356 PANTHER TRANSCRIPTION FACTOR TGA9 2 355 - -
Sed13g0975 356 SMART brlzneu 74 152 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g0975 356 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0972 Sed-Chr13:7517364 Sed13g0975 Sed-Chr13:7517364 1.50E-196 dispersed
Sed13g0973 Sed-Chr13:7517364 Sed13g0975 Sed-Chr13:7517364 3.10E-194 dispersed
Sed13g0974 Sed-Chr13:7517364 Sed13g0975 Sed-Chr13:7517364 2.50E-188 tandem
Sed13g0975 Sed-Chr13:7517364 Sed13g0976 Sed-Chr13:7517364 6.50E-131 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40401 PF14144 DOG1 1.50E-28 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0975 K14431 - csv:116401613 613.609