Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0980 ATGAGGAGGAAGGGGCTGAATGGGGCTTTGGTTTTGCTTTGGTTCATCTATGTGGGGCAATTTGGTGTCATTGTCTCTGCTACTGTGGAAGCTACTGCTCTGCATATATTTCGATCGAATTTGGAAGATCCAAACAATGTTCTGCAGAGTTGGGACCCTACCCTTGTAAACCCATGCACTTGGTTTCATGTCACTTGCAACAATGAAAATAACATTATTAGAGTCGACCTTGGAAATGCTGGATTGTCTGGTAAATTAGTACCACAACTTGGTCAGCTTAAAAGCCTGCAATACTTGGAGCTTTATGGTAACAACATAAGTGGAGAGATTCCAGATGATCTTGGTAATCTGGAAAACTTGGTGAGCCTAGACCTTTACTTGAACGGTTTAAATGGCCCGATTCCAGAAACGTTTGGCAAGCTCGCACAATTGCGTTTCCTCCGGCTAAATGACAACAAATTATTTGGCTCAATACCAATGTCCTTGACTAATATTTCCACCCTGCAAGTCTTGGATCTATCGAACAACCTCTTATCAGGAAGGGTTCCAAATAATGGTTCATTTTCACTATTTACTCCCATAAGTTTCGCAACGAACTCCGATTTATGCGGTCTGGTAACTGGAAAACCCTGCCCTGGGGATCCTCCTTTTTCTCCTCCACCGCCATTTGTTCCACAGACAACATTCTCTTCCTATGAAGAAAACAATCCCAATGGAGCAATTGTTGGAGGAGTGGCTGCAGGTGCTGCTTTACTTTTTGCCACTCCAGCTATCATATATGTCTATTGGCATCGAATGCGATCACGAGAGACATTCTTCGATGTCCCTGCGGAAGAAGATCCAGAGATCAACTCCGGGCAGTTGAAGAGGTTTTCCTTGAGAGACTTACAAGTTGCAACAGATAACTTCAACAACAAAAACATTCTCGGTCGAGGTGGATTTGGTCTCGTGTACAGGGGACGACTGGCCGATGGCTCATTAGTAGCAGTAAAAAGGCTCAAAGAAGAGCGTACGCCAGGAGGGGAGTTGCAGTTTCAAACAGAGGTAGAGATGATTAGCATGGCTGTACATCGAAATCTCTTACGACTACATGGATTTTGTACAACGACAACCGAACGCCTCCTTGTTTATCCTTATATGGCTAATGGAAGTGTTGCATCATGTTTAAGAGAACGGCCGCAATCCGAAGCTCCTCTCGACTGGCTAACTCGGAAGAAAGTTGCATTAGGCTCTGCAAGGGGCCTTTCTTATTTACACGATGGATGTGATCCAAAAATCATTCATCGTGATGTGAAAGCTGCAAATATTTTACTAGATGAGGAGTTTGAGGCTGTTGTTGGTGATTTTGGTCTTGCAAAACTAATGGACTACAAGGATACACACGTAACAACCGCAGTACGTGGTACAATAGGACATATAGCTCCAGAGTATCTCTCAACTGGAAAGTCGTCTGAAAAGACTGATGTTTTTGGCTATGGCATTATGCTCTTGGAGCTCATAACCGGACAGCGGGCTTTCGATCTCGCTCGTCTTGCAAACGATGAAGATGTTATGCTGCTTGATTGGGTCAAAGGCCTTCTAAAAGAGAAAAAGTTGGAGATGTTGGTTGACCCTGATCTAAAGGACAACTATGATGAACTTGAAGTTGAGCAAATCATCCAAGTAGCACTTTTGTGCACACAAAGCTCACCCATGGAACGACCAAAAATGTACGATGTCGTTAGAATGCTTGAAGGAGACGGGTTGACGGAGCGATGGGAAGCATGGCAGAGAGTCGAGATCATCTACCACGAAACTGAATTGGCCTCTTCTCAAACTTCTGAATGGATGGCCGATTCAACCGAAAATGTTCATGCTTTTGAATTATCAGGTCCTAGGTAA 1881 43.97 MRRKGLNGALVLLWFIYVGQFGVIVSATVEATALHIFRSNLEDPNNVLQSWDPTLVNPCTWFHVTCNNENNIIRVDLGNAGLSGKLVPQLGQLKSLQYLELYGNNISGEIPDDLGNLENLVSLDLYLNGLNGPIPETFGKLAQLRFLRLNDNKLFGSIPMSLTNISTLQVLDLSNNLLSGRVPNNGSFSLFTPISFATNSDLCGLVTGKPCPGDPPFSPPPPFVPQTTFSSYEENNPNGAIVGGVAAGAALLFATPAIIYVYWHRMRSRETFFDVPAEEDPEINSGQLKRFSLRDLQVATDNFNNKNILGRGGFGLVYRGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLHGFCTTTTERLLVYPYMANGSVASCLRERPQSEAPLDWLTRKKVALGSARGLSYLHDGCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDEDVMLLDWVKGLLKEKKLEMLVDPDLKDNYDELEVEQIIQVALLCTQSSPMERPKMYDVVRMLEGDGLTERWEAWQRVEIIYHETELASSQTSEWMADSTENVHAFELSGPR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7562481 7567844 - Sed0013837.1 Sed13g0980 734490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0980 626 Pfam Leucine Rich Repeat 143 164 IPR001611 GO:0005515(InterPro)
Sed13g0980 626 Pfam Leucine Rich Repeat 95 117 IPR001611 GO:0005515(InterPro)
Sed13g0980 626 Pfam Leucine Rich Repeat 119 141 IPR001611 GO:0005515(InterPro)
Sed13g0980 626 Pfam Leucine Rich Repeat 168 184 IPR001611 GO:0005515(InterPro)
Sed13g0980 626 FunFam Somatic embryogenesis receptor kinase 1 272 379 - -
Sed13g0980 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 15 626 - -
Sed13g0980 626 Gene3D Ribonuclease Inhibitor 27 213 IPR032675 -
Sed13g0980 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0980 626 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Sed13g0980 626 ProSiteProfiles Protein kinase domain profile. 303 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0980 626 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524(InterPro)
Sed13g0980 626 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Sed13g0980 626 Pfam Protein tyrosine and serine/threonine kinase 306 577 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0980 626 SUPERFAMILY Protein kinase-like (PK-like) 282 578 IPR011009 -
Sed13g0980 626 SMART serkin_6 303 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0980 626 FunFam Somatic embryogenesis receptor kinase 1 26 213 - -
Sed13g0980 626 FunFam Somatic embryogenesis receptor-like kinase 1 380 597 - -
Sed13g0980 626 Gene3D Transferase(Phosphotransferase) domain 1 380 597 - -
Sed13g0980 626 SUPERFAMILY L domain-like 30 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2892 Sed-Chr7:43545165 Sed13g0980 Sed-Chr13:7562481 8.80E-240 dispersed
Sed12g2260 Sed-Chr12:32916373 Sed13g0980 Sed-Chr13:7562481 6.50E-116 dispersed
Sed13g0328 Sed-Chr13:2222494 Sed13g0980 Sed-Chr13:7562481 1.10E-147 dispersed
Sed13g0329 Sed-Chr13:2225933 Sed13g0980 Sed-Chr13:7562481 3.20E-146 dispersed
Sed13g0948 Sed-Chr13:7181078 Sed13g0980 Sed-Chr13:7562481 6.40E-118 dispersed
Sed13g0949 Sed-Chr13:7181078 Sed13g0980 Sed-Chr13:7562481 6.40E-118 dispersed
Sed13g0980 Sed-Chr13:7562481 Sed14g1517 Sed-Chr14:23471039 1.10E-114 dispersed
Sed13g0980 Sed-Chr13:7562481 Sed10g1721 Sed-Chr10:34204923 3.20E-242 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80089 PF00069 Pkinase 1.30E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0980 K13418 - csv:101208905 1062.37