Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0981 ATGGCCATAAATATGACCTATCTACGGTTCTCACATGGATGTCTAGATAGCACACTCCCCATTGAAGCCGTCTTTCCTCTCAATTTAATTTCTCCTCTCTTCACTTTAAAATCCCCACCACAACCACCCTCCACCACCACCGAACTCCCCCCCTCCGCCGTCAATTTCCGTCCAAACCTCACCGTCATGAGCGGCAACAGCATCCAATACCCCACCTCCGGCAGCCCCGCCGGAGAACAAGACCGGTTCCTTCCGATCGCCAACGTGAGCCGAATCATGAAAAGATCCCTTCCGGCGAACGCCAAAATCTCGAAAGAGGCGAAAGAAACGGTGCAGGAATGCGTGTCGGAGTTCATAAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAACGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGTTTCCAAAATTACGTCGCCCCTTTGAAGAATTTCCTCAATAAATACAGAGAAACAGAGGAGGAGAAGCACCAAGCTCCGTCTCCGGCGCCGGCGGTGGGTTCCGGTGCCGGCGCCGATCAGGGGATTGGTGGGAAATTGGGCGATTCGGTGAGGGATTTTCAGGATTTAAATTATGGGTTTTATTCGTTTGGGAATCATAATCATAACCATCATCACGGCGTTGGATTTGGGGACAAACCTCTGGCTCCCGATTTTTATATATACAGCCAAAATACAAATGGGAATTAA 741 51.01 MAINMTYLRFSHGCLDSTLPIEAVFPLNLISPLFTLKSPPQPPSTTTELPPSAVNFRPNLTVMSGNSIQYPTSGSPAGEQDRFLPIANVSRIMKRSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFQNYVAPLKNFLNKYRETEEEKHQAPSPAPAVGSGAGADQGIGGKLGDSVRDFQDLNYGFYSFGNHNHNHHHGVGFGDKPLAPDFYIYSQNTNGN 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7580450 7586969 + Sed0022154.1 Sed13g0981 734491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0981 246 Gene3D Histone, subunit A 73 191 IPR009072 GO:0046982(InterPro)
Sed13g0981 246 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 74 180 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Sed13g0981 246 SUPERFAMILY Histone-fold 80 188 IPR009072 GO:0046982(InterPro)
Sed13g0981 246 FunFam Nuclear transcription factor Y subunit B-3 72 193 - -
Sed13g0981 246 PRINTS CCAAT-binding transcription factor subunit A signature 111 129 - -
Sed13g0981 246 PRINTS CCAAT-binding transcription factor subunit A signature 149 167 - -
Sed13g0981 246 PRINTS CCAAT-binding transcription factor subunit A signature 130 148 - -
Sed13g0981 246 MobiDBLite consensus disorder prediction 168 191 - -
Sed13g0981 246 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 83 147 IPR003958 -
Sed13g0981 246 ProSitePatterns NF-YB/HAP3 subunit signature. 114 130 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2904 Sed-Chr8:40059012 Sed13g0981 Sed-Chr13:7580450 1.10E-32 dispersed
Sed09g1217 Sed-Chr9:36413865 Sed13g0981 Sed-Chr13:7580450 3.40E-34 dispersed
Sed13g0981 Sed-Chr13:7580450 Sed07g1707 Sed-Chr7:15719286 7.60E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40405 PF00808 CBFD_NFYB_HMF 2.30E-26 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0981 K08065 - csv:116406241 207.223