Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g0981 | ATGGCCATAAATATGACCTATCTACGGTTCTCACATGGATGTCTAGATAGCACACTCCCCATTGAAGCCGTCTTTCCTCTCAATTTAATTTCTCCTCTCTTCACTTTAAAATCCCCACCACAACCACCCTCCACCACCACCGAACTCCCCCCCTCCGCCGTCAATTTCCGTCCAAACCTCACCGTCATGAGCGGCAACAGCATCCAATACCCCACCTCCGGCAGCCCCGCCGGAGAACAAGACCGGTTCCTTCCGATCGCCAACGTGAGCCGAATCATGAAAAGATCCCTTCCGGCGAACGCCAAAATCTCGAAAGAGGCGAAAGAAACGGTGCAGGAATGCGTGTCGGAGTTCATAAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAACGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGTTTCCAAAATTACGTCGCCCCTTTGAAGAATTTCCTCAATAAATACAGAGAAACAGAGGAGGAGAAGCACCAAGCTCCGTCTCCGGCGCCGGCGGTGGGTTCCGGTGCCGGCGCCGATCAGGGGATTGGTGGGAAATTGGGCGATTCGGTGAGGGATTTTCAGGATTTAAATTATGGGTTTTATTCGTTTGGGAATCATAATCATAACCATCATCACGGCGTTGGATTTGGGGACAAACCTCTGGCTCCCGATTTTTATATATACAGCCAAAATACAAATGGGAATTAA | 741 | 51.01 | MAINMTYLRFSHGCLDSTLPIEAVFPLNLISPLFTLKSPPQPPSTTTELPPSAVNFRPNLTVMSGNSIQYPTSGSPAGEQDRFLPIANVSRIMKRSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFQNYVAPLKNFLNKYRETEEEKHQAPSPAPAVGSGAGADQGIGGKLGDSVRDFQDLNYGFYSFGNHNHNHHHGVGFGDKPLAPDFYIYSQNTNGN | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 7580450 | 7586969 | + | Sed0022154.1 | Sed13g0981 | 734491 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g0981 | 246 | Gene3D | Histone, subunit A | 73 | 191 | IPR009072 | GO:0046982(InterPro) | |
Sed13g0981 | 246 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 74 | 180 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Sed13g0981 | 246 | SUPERFAMILY | Histone-fold | 80 | 188 | IPR009072 | GO:0046982(InterPro) | |
Sed13g0981 | 246 | FunFam | Nuclear transcription factor Y subunit B-3 | 72 | 193 | - | - | |
Sed13g0981 | 246 | PRINTS | CCAAT-binding transcription factor subunit A signature | 111 | 129 | - | - | |
Sed13g0981 | 246 | PRINTS | CCAAT-binding transcription factor subunit A signature | 149 | 167 | - | - | |
Sed13g0981 | 246 | PRINTS | CCAAT-binding transcription factor subunit A signature | 130 | 148 | - | - | |
Sed13g0981 | 246 | MobiDBLite | consensus disorder prediction | 168 | 191 | - | - | |
Sed13g0981 | 246 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 83 | 147 | IPR003958 | - | |
Sed13g0981 | 246 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 114 | 130 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2904 | Sed-Chr8:40059012 | Sed13g0981 | Sed-Chr13:7580450 | 1.10E-32 | dispersed | |
Sed09g1217 | Sed-Chr9:36413865 | Sed13g0981 | Sed-Chr13:7580450 | 3.40E-34 | dispersed | |
Sed13g0981 | Sed-Chr13:7580450 | Sed07g1707 | Sed-Chr7:15719286 | 7.60E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40405 | PF00808 | CBFD_NFYB_HMF | 2.30E-26 | CL0012 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g0981 | K08065 | - | csv:116406241 | 207.223 |