Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0992 ATGAACTCAAAAGGTTGGGATTTCGTACCTAAGAAAAAAACCATCCACCTCTTGTCCTTGGAGAATGGCGAGAACCATCTCGCGATAAAAGATAGTTCTTCTCATCGAAGAGAAATGAGTTCAATATTTGATGAGACTTCTCCCACGCCGGACTCTACGTCTAGCCCCGCATCGCCGGATTCGCCATCTACGCCATCGTCTCCCGGTTCGAATGCTGATTCCTCTCCACCACCACCTTCATTGAACGAGGGCGAGTTTGATTTCGTCTCTCAGTCTCCACCTGCACCTACAGAAGAATCTGCACCACCAAAGGGCTCGTCCTCAAAGGGCTCGTCAAAGGGCTCGTCCGATAGTGGCAATAATTCTAATTCATCTCCAAAAGTAGGAAGCCCGGAGTCAACCCCGGTTGGTTCTCGATCTTCTCCATCTCGATCTTCATCTGCATCAGATGCATTGGCTCCACCAAGTGAACGGAAAGAATCGTCGAAATCATCGGGAGAAAAACATCGATCATCGTCATCAAACAACAATGATTCGGGGCCGCCTGATGTCGACCCCGGAGTTATAATTGGGGTGGCGGTAGGGGTGGGAGTATTCATAATTGTTCTCATATCAATAATTGCAATGTGTTCCAAGAAGAAGAAGAGAAAGGTAGATCCTATGCAATATTATGGAGATCCTGGCAATGGACCTAAAGGTGGTGAGTATTACAACCATCCACCGCAACCAAACTGGCACAACAACGGCATGCACGGTCCCGGGACGGACCAATTCGGGACCCCGGGCGGGGGTGGGTGGCCACCGATGAACAGTGAAAACATGACGACGGGTAGTTCTTACGGAGGCCCTCCTCTTCCACCGCCATCTCCATCGATCGCCTTCGGGTTCAACAAGAGCACATTCACATACGACGAGCTTGCAGCAGCAACAGGTGGGTTTGCGCATGGGAACCTGCTCGGGCAGGGCGGGTTCGGGTACGTGCACAAGGGGGTACTACCGAATGGAAAGGAGGTCGCGGTGAAGAGCCTGAAGGTGGGCAGTGGGCAGGGGGAGAGGGAGTTCATGGCTGAGGTTGAAATTATTAGCAGAGTTCACCATAGGCACTTGGTGTCCTTGGTTGGCTTTTGCATTGCTGGTGGGCAAAGAATGTTGGTTTATGAATTTGTTCCTAACTTCACCATGGAGCATCACCTTCATGGTAAAGGTCGCCCAGTTATGGATTGGCCAACGAGACTTCGTATTGCTACAGGTTCTGCCAAGGGTCTTGCTTACCTTCATGAAGACTGTCATCCAAAGATTATTCATCGAGATATCAAGTCAGCTAATATTTTGATTGATTCCAACTTTGAAGCAATGGTGGCAGATTTTGGATTGGCTAAGCTGTCTACAGATAATCACACCCATGTCTCCACCAGGGTTATGGGCACATTTGGGTATTTGGCGCCGGAATATGCATCGAGCGGAAAGCTGACAGAGAAGTCTGACGTGTTTTCATTCGGTGTAATGTTGTTGGAACTCATTACTGGAAAACGACCTGTCGATCCCACTCATGCCATGGAGGATAGCTTAGTCGACTGGGCGCGTCCACTTATGAGTCAAGCATTGGGAGATGGCAACTACGAAGAGTTTGTAGATAGCCGGTTAGAAAGCCAGTTCAACACTCAAGAGATGTCTCGCATGGTAGCTTGTGCTGCTGCCTCCATCCGCCACTCGGCTAGAAAACGCCCCAAAATGAGTCAGGTAGTACGAGCCTTAGAAGGGGATGTTTTGTTGGAGGATCTAAACGAAGGGATAAGACCAGGTCAAAGCTCCGTTTACGGTACCGGGACTAGCTTGGAGTACGATTCAAGTGCTTACAATGCCGACATGTCGAAATTCAGGAAAATGGCTTTGTCTGAGGATAGCAGCGAGCTCGGAACTTCGAGCAATGACTCGAGAGAGATGAACCATCATGGAACCCAGCGGCCGCTCTTTTGA 1977 49.62 MNSKGWDFVPKKKTIHLLSLENGENHLAIKDSSSHRREMSSIFDETSPTPDSTSSPASPDSPSTPSSPGSNADSSPPPPSLNEGEFDFVSQSPPAPTEESAPPKGSSSKGSSKGSSDSGNNSNSSPKVGSPESTPVGSRSSPSRSSSASDALAPPSERKESSKSSGEKHRSSSSNNNDSGPPDVDPGVIIGVAVGVGVFIIVLISIIAMCSKKKKRKVDPMQYYGDPGNGPKGGEYYNHPPQPNWHNNGMHGPGTDQFGTPGGGGWPPMNSENMTTGSSYGGPPLPPPSPSIAFGFNKSTFTYDELAAATGGFAHGNLLGQGGFGYVHKGVLPNGKEVAVKSLKVGSGQGEREFMAEVEIISRVHHRHLVSLVGFCIAGGQRMLVYEFVPNFTMEHHLHGKGRPVMDWPTRLRIATGSAKGLAYLHEDCHPKIIHRDIKSANILIDSNFEAMVADFGLAKLSTDNHTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPTHAMEDSLVDWARPLMSQALGDGNYEEFVDSRLESQFNTQEMSRMVACAAASIRHSARKRPKMSQVVRALEGDVLLEDLNEGIRPGQSSVYGTGTSLEYDSSAYNADMSKFRKMALSEDSSELGTSSNDSREMNHHGTQRPLF 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7764733 7771674 - Sed0020830.1 Sed13g0992 734502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0992 658 Pfam Protein tyrosine and serine/threonine kinase 317 585 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0992 658 MobiDBLite consensus disorder prediction 28 42 - -
Sed13g0992 658 FunFam Proline-rich receptor-like protein kinase PERK1 389 596 - -
Sed13g0992 658 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524(InterPro)
Sed13g0992 658 ProSiteProfiles Protein kinase domain profile. 313 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0992 658 MobiDBLite consensus disorder prediction 101 152 - -
Sed13g0992 658 Gene3D Transferase(Phosphotransferase) domain 1 390 593 - -
Sed13g0992 658 MobiDBLite consensus disorder prediction 43 70 - -
Sed13g0992 658 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 157 629 IPR047117 -
Sed13g0992 658 MobiDBLite consensus disorder prediction 632 658 - -
Sed13g0992 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0992 658 Gene3D Phosphorylase Kinase; domain 1 290 388 - -
Sed13g0992 658 CDD STKc_IRAK 319 587 - -
Sed13g0992 658 SMART serkin_6 313 574 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0992 658 MobiDBLite consensus disorder prediction 21 182 - -
Sed13g0992 658 MobiDBLite consensus disorder prediction 252 284 - -
Sed13g0992 658 FunFam proline-rich receptor-like protein kinase PERK1 291 388 - -
Sed13g0992 658 SUPERFAMILY Protein kinase-like (PK-like) 287 585 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1393 Sed-Chr10:29843960 Sed13g0992 Sed-Chr13:7764733 2.50E-152 dispersed
Sed11g0064 Sed-Chr11:603717 Sed13g0992 Sed-Chr13:7764733 2.10E-153 dispersed
Sed11g2083 Sed-Chr11:34752321 Sed13g0992 Sed-Chr13:7764733 2.30E-94 dispersed
Sed11g2084 Sed-Chr11:34752321 Sed13g0992 Sed-Chr13:7764733 6.50E-75 dispersed
Sed12g2433 Sed-Chr12:34021080 Sed13g0992 Sed-Chr13:7764733 5.50E-146 dispersed
Sed13g0992 Sed-Chr13:7764733 Sed01g4251 Sed-Chr1:70822313 4.10E-78 dispersed
Sed13g0992 Sed-Chr13:7764733 Sed07g2002 Sed-Chr7:34982001 2.80E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80090 PF07714 PK_Tyr_Ser-Thr 6.10E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0992 - - - 0.0