Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0998 ATGCCAACGGACAATCAACCCCCAAAATCCGCCGTCAAAAAGAAGCGGAATTTACCCGGAATGCCAGATCCAGAAGCAGAGGTAATTGCTCTGTCTCCTCACACCCTTTTAGCGACAAATCGATTCGTTTGTGAAATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTCCACCGGCGAGGGCACAATCTTCCATGGAAGCTCCGGCAGCGGACGAGCAAAGAGGTGGTAAAGAAGGTGTACGTCTGCCCGGAGCCGTCGTGCGTCCACCACAGTCCGGCGAGAGCCCTCGGCGATCTCACCGGAATTAAGAAGCACTTCTGCCGGAAACATGGCGAGAAGAAATGGAGGTGCGATAAGTGTTCTAAGAAGTACGCCGTCAAGTCCGATTGGAAGGCTCACTCGAAAATTTGTGGTACCCGAGAGTACAAATGCGACTGTGAAACTGTGTTTTCGAGAAGAGATAGTTTCATTACACATAGAGCTTTTTGTGATGTCTTGACGAAGGAGGCTGCCGGATGTCTGTCTCCGGCGGCGGCGGCGGAGAATCCTGATTTGGAAAACGATCCTCGAGCTCCGCCGTCTATTGCTCCTCCTCCTTCCGCCGCTACCGCCGCCGCGCAAATTGCCCATCCTCCATTGGCCGATGCGATACCATCAATCTCGCTCATTCAGGAAAAAGCCATTGAGTTGCCGGTAAACCCTCCGCCGCCGGTAGAAGAAGCACCGGGCAAAACTGCTCTAACTGGCAGTTCCAGCAGCAGCACCACAATTAGCAGCAACTCAACCGTATTGGCTACCTTGTTTTCTTCCTCCGCCACATCACTAGGCTTACTACCGCCGCAGCCGCTGGCGTTCAGCGACTTGTTACGAGCCATGGCGCGGCCCAATCGGGCGGGCGACATTGCACCGCCTTTGGTTTTTGAGCCTCTTTCTCTATGCCTATCGACCCACACCGGATCATCGGTTTTCGGAACGGGAATTCAAGAGCGCCGCCCATATGTGTTGCCGACGCCGGCGGCCATGTCAGCCACGGGGCTACTGCAGAAGGCTGCGCAAATGGGCGCTGCGGCGGCGAGCATGTCGGTGTTTCATGGACTTGGTTTGTCGTCTTCTACCTCTTCTTCTGCACAACAACAAGGGAGTTTGTAA 1158 54.15 MPTDNQPPKSAVKKKRNLPGMPDPEAEVIALSPHTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVVKKVYVCPEPSCVHHSPARALGDLTGIKKHFCRKHGEKKWRCDKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDVLTKEAAGCLSPAAAAENPDLENDPRAPPSIAPPPSAATAAAQIAHPPLADAIPSISLIQEKAIELPVNPPPPVEEAPGKTALTGSSSSSTTISSNSTVLATLFSSSATSLGLLPPQPLAFSDLLRAMARPNRAGDIAPPLVFEPLSLCLSTHTGSSVFGTGIQERRPYVLPTPAAMSATGLLQKAAQMGAAAASMSVFHGLGLSSSTSSSAQQQGSL 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7833345 7837555 + Sed0009891.1 Sed13g0998 734508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0998 385 SUPERFAMILY beta-beta-alpha zinc fingers 41 138 IPR036236 -
Sed13g0998 385 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 80 113 - -
Sed13g0998 385 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 374 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed13g0998 385 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 144 175 - -
Sed13g0998 385 Pfam Zinc finger, C2H2 type 42 64 IPR013087 -
Sed13g0998 385 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Sed13g0998 385 SMART c2h2final6 83 113 IPR013087 -
Sed13g0998 385 SMART c2h2final6 42 64 IPR013087 -
Sed13g0998 385 SMART c2h2final6 118 138 IPR013087 -
Sed13g0998 385 FunFam protein indeterminate-domain 12-like 21 89 - -
Sed13g0998 385 Gene3D Classic Zinc Finger 96 174 - -
Sed13g0998 385 MobiDBLite consensus disorder prediction 235 259 - -
Sed13g0998 385 FunFam protein indeterminate-domain 5, chloroplastic-like 96 175 - -
Sed13g0998 385 Gene3D Classic Zinc Finger 42 87 - -
Sed13g0998 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 64 IPR013087 -
Sed13g0998 385 MobiDBLite consensus disorder prediction 1 23 - -
Sed13g0998 385 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 117 141 - -
Sed13g0998 385 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1691 Sed-Chr7:15208185 Sed13g0998 Sed-Chr13:7833345 2.10E-137 dispersed
Sed07g1692 Sed-Chr7:15208185 Sed13g0998 Sed-Chr13:7833345 9.80E-142 dispersed
Sed10g0908 Sed-Chr10:7033708 Sed13g0998 Sed-Chr13:7833345 1.70E-113 dispersed
Sed13g0998 Sed-Chr13:7833345 Sed14g1101 Sed-Chr14:20503976 7.30E-104 dispersed
Sed13g0998 Sed-Chr13:7833345 Sed07g1690 Sed-Chr7:15208185 9.10E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40406 PF00096 zf-C2H2 0.0037 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0998 K25869 - csv:101215476 512.301