Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1016 ATGGCTCGATCTCGAACCATTCTCTTTTCTTTTGCTCTATTTTCTTTGTCTTCGATTTGTTTCTCTCACAAAATTGGCAGCGGGGGCGGTTATGACGGTTATTTGTATCCTCAATTTTATGATCGTTCTTGTCCTAGAGCTCAAGAGATAATCAAATATATTGTGGCTAAGGCTGTTGCCAAGGAAGCTCGCATGGCAGCTTCTTTGCTTAGGCTTCATTTCCATGATTGTTTTGTTAAGGGTTGTGATGGTTCGCTGTTGTTAGATAGCAGTGTGACACTAGCTAGTGAGAAAATGTCCAATCCAAATAGGAACTCTGCTAGAGGCTTTGGAGTCATTGATGAGATCAAATCTGCCTTGGAAAAGGAGTGTCCCCAAACTGTTTCTTGTGCTGATATTTTGGCAGTCGCTGCAAGAGACTCAACCGTCCTAACAGGAGGACCGAGTTGGGAAGTTCCACTTGGTAGAAGGGACTCAAGAGGAGCAAGTCTAAGTGGGTCTAACAATGACATTCCTGCTCCAAACAACACATTCCAAACCATTCTCACCAAGTTCAAGAGACAAGGCCTTGACATTGTTGATCTTGTTGCTCTTTCAGGGAGCCACACCATCGGAAACTCCCGATGCACCAGCTTCAGGCAACGACTCTACAACCAATCTGGCAATGCCAAGCCCGACTCTTCTCTCGATCCTTCGTATGCTGCTGAATTGCGCAAGGGATGCCCTAGATCAGGGGGTGACCAGAACCTCTTTTTCCTCGACTACGTCAGCCCAGTGAGGTTTGACAATTACTACTTCAAGAACCTCTTGGTTGGAAAGGGTCTGCTGAACTCAGACGAAGTTCTCTTCACGAAGAACGCACAATCGGCGGAGTTAGTGAGGGCATATGCAGAGAATTCAGAGCTGTTTTTTGAGCAATTTGCCAAGTCCATGGTTAAGATGGGAAACATTTCTCCTCTCACTGGTTCAAGGGGTGAGATCAGAAAGATTTGCAGGAGAGTTAACAAAAATTAG 1014 45.36 MARSRTILFSFALFSLSSICFSHKIGSGGGYDGYLYPQFYDRSCPRAQEIIKYIVAKAVAKEARMAASLLRLHFHDCFVKGCDGSLLLDSSVTLASEKMSNPNRNSARGFGVIDEIKSALEKECPQTVSCADILAVAARDSTVLTGGPSWEVPLGRRDSRGASLSGSNNDIPAPNNTFQTILTKFKRQGLDIVDLVALSGSHTIGNSRCTSFRQRLYNQSGNAKPDSSLDPSYAAELRKGCPRSGGDQNLFFLDYVSPVRFDNYYFKNLLVGKGLLNSDEVLFTKNAQSAELVRAYAENSELFFEQFAKSMVKMGNISPLTGSRGEIRKICRRVNKN 337
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 8275705 8276962 + Sed0001083.1 Sed13g1016 734526
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1016 337 PANTHER PEROXIDASE 72-RELATED 16 334 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 CDD secretory_peroxidase 35 334 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed13g1016 337 SUPERFAMILY Heme-dependent peroxidases 35 335 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 FunFam Peroxidase 38 180 - -
Sed13g1016 337 PRINTS Plant peroxidase signature 252 267 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 PRINTS Plant peroxidase signature 268 285 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 PRINTS Plant peroxidase signature 309 322 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 PRINTS Plant peroxidase signature 127 137 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 PRINTS Plant peroxidase signature 44 63 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 PRINTS Plant peroxidase signature 68 88 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 PRINTS Plant peroxidase signature 193 205 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 PRINTS Plant peroxidase signature 146 161 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 PRINTS Plant peroxidase signature 108 121 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 PRINTS Haem peroxidase superfamily signature 66 80 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 PRINTS Haem peroxidase superfamily signature 128 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 PRINTS Haem peroxidase superfamily signature 146 158 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 PRINTS Haem peroxidase superfamily signature 194 209 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 PRINTS Haem peroxidase superfamily signature 254 269 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 Pfam Peroxidase 53 299 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 FunFam Peroxidase 172 314 - -
Sed13g1016 337 ProSitePatterns Peroxidases active site signature. 66 77 IPR019794 GO:0004601(InterPro)
Sed13g1016 337 Gene3D - 39 335 - -
Sed13g1016 337 ProSiteProfiles Plant heme peroxidase family profile. 34 335 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1016 337 ProSitePatterns Peroxidases proximal heme-ligand signature. 194 204 IPR019793 -
Sed13g1016 337 Gene3D Peroxidase, domain 2 172 315 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1480 Sed-Chr6:39529727 Sed13g1016 Sed-Chr13:8275705 1.20E-78 dispersed
Sed13g1016 Sed-Chr13:8275705 Sed14g1158 Sed-Chr14:20964850 8.90E-138 dispersed
Sed13g1016 Sed-Chr13:8275705 Sed13g1017 Sed-Chr13:8299105 3.60E-179 tandem
Sed04g3084 Sed-Chr4:41831546 Sed13g1016 Sed-Chr13:8275705 4.00E-82 transposed
Sed13g0946 Sed-Chr13:7171090 Sed13g1016 Sed-Chr13:8275705 1.90E-76 transposed
Sed13g1039 Sed-Chr13:8513063 Sed13g1016 Sed-Chr13:8275705 1.90E-56 transposed
Sed10g0957 Sed-Chr10:7825997 Sed13g1016 Sed-Chr13:8275705 8.20E-128 wgd
Sed13g1016 Sed-Chr13:8275705 Sed07g2007 Sed-Chr7:35039231 4.50E-73 wgd
Sed13g1016 Sed-Chr13:8275705 Sed07g1667 Sed-Chr7:14402524 2.00E-161 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1016 K00430 - csv:101223204 577.4