Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1017 ATGGCTCGATCTCGAAGCATTCTCTTCGCTTTTGCTCTTCTTTCCTTGGCTTCAATTTGTTTTTCTCACAATATTGGTGGCGGCGGCGGTCATGACGGTTCTTTGTATCCTCAATTTTATGAACATTCTTGTCCTAGAGCTCAAGAGATAATAAAGTATGGTGTGGCTAAGGCTGTTGCTAAGGAAACTCGCATGGCAGCTTCTTTGCTTAGGCTTCATTTCCATGATTGTTTTGTCAAGGGTTGTGATGGTTCAGTATTGTTAGATAGCAGTGGGACACTGGCTAGTGAGAAAAGATCCAATCCAAATAGGGACTCTGCTAGAGGCTTTGAAGTCATTGATGAGATCAAATCTGCCTTGGAAAAGGAGTGTCCCCAAACTGTTTCTTGTGCTGATATTTTGGCCGTCGCTGCAAGAGACTCGACCGTCCTAACAGGAGGACCGAGTTGGGAAGTTCCACTTGGTAGAAGGGACTCAAGAGGAGCAAGTCTAAGTGGGTCTAACAATGACATTCCTGCTCCAAACAACACATTCCAAACCATTCTCACCAAGTTCAAGAGACAAGGCCTTGACATTGTTGATCTTGTTGCTCTTTCAGGGAGCCACACCATCGGAAACTCCCGATGCACCAGCTTCAGGCAACGACTCTACAACCAATCTGGCAATGCCAAGCCCGACTCTTCTCTCGATCCATCATATGCTGCTGAATTGCGCAAGGGATGCCCGAGATCAGGGGGTGACCAGAACCTCTTTTTCCTTGACCTCGTCAGCCCAGTGAGGTTCGACAATTACTACTTTAAGAACCTCTTGGTTGGAAAGGGTCTGCTAAACTCGGATGAAGTTCTCTTCACAAAGAACGAACAATCGGCGGAGTTGGTGAGGACATATGCAGAGAACTTAGAGGTGTTTTTTGAGCAATTTGCCAAGTCCATGATTAAGATGGGAAACATTTCTCCTCTCACTGGTTCAAGGGGTGAGATCAGAAAGATTTGCAGGAGAGTTAACAAAAATTAG 1014 45.66 MARSRSILFAFALLSLASICFSHNIGGGGGHDGSLYPQFYEHSCPRAQEIIKYGVAKAVAKETRMAASLLRLHFHDCFVKGCDGSVLLDSSGTLASEKRSNPNRDSARGFEVIDEIKSALEKECPQTVSCADILAVAARDSTVLTGGPSWEVPLGRRDSRGASLSGSNNDIPAPNNTFQTILTKFKRQGLDIVDLVALSGSHTIGNSRCTSFRQRLYNQSGNAKPDSSLDPSYAAELRKGCPRSGGDQNLFFLDLVSPVRFDNYYFKNLLVGKGLLNSDEVLFTKNEQSAELVRTYAENLEVFFEQFAKSMIKMGNISPLTGSRGEIRKICRRVNKN 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8299105 8300768 - Sed0027857.1 Sed13g1017 734527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1017 337 Gene3D Peroxidase, domain 2 172 314 - -
Sed13g1017 337 ProSiteProfiles Plant heme peroxidase family profile. 34 335 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 CDD secretory_peroxidase 35 334 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed13g1017 337 FunFam Peroxidase 38 180 - -
Sed13g1017 337 PANTHER PEROXIDASE 72-RELATED 13 334 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 SUPERFAMILY Heme-dependent peroxidases 35 335 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 PRINTS Haem peroxidase superfamily signature 66 80 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 PRINTS Haem peroxidase superfamily signature 128 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 PRINTS Haem peroxidase superfamily signature 146 158 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 PRINTS Haem peroxidase superfamily signature 254 269 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 PRINTS Haem peroxidase superfamily signature 194 209 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 FunFam Peroxidase 172 314 - -
Sed13g1017 337 MobiDBLite consensus disorder prediction 149 170 - -
Sed13g1017 337 PRINTS Plant peroxidase signature 268 285 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 PRINTS Plant peroxidase signature 127 137 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 PRINTS Plant peroxidase signature 252 267 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 PRINTS Plant peroxidase signature 309 322 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 PRINTS Plant peroxidase signature 193 205 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 PRINTS Plant peroxidase signature 44 63 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 PRINTS Plant peroxidase signature 108 121 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 PRINTS Plant peroxidase signature 146 161 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 PRINTS Plant peroxidase signature 68 88 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 Pfam Peroxidase 54 299 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1017 337 ProSitePatterns Peroxidases active site signature. 66 77 IPR019794 GO:0004601(InterPro)
Sed13g1017 337 ProSitePatterns Peroxidases proximal heme-ligand signature. 194 204 IPR019793 -
Sed13g1017 337 Gene3D - 39 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3084 Sed-Chr4:41831546 Sed13g1017 Sed-Chr13:8299105 2.10E-83 dispersed
Sed05g0316 Sed-Chr5:1941109 Sed13g1017 Sed-Chr13:8299105 9.80E-89 dispersed
Sed05g1096 Sed-Chr5:10334704 Sed13g1017 Sed-Chr13:8299105 5.10E-69 dispersed
Sed07g1667 Sed-Chr7:14402524 Sed13g1017 Sed-Chr13:8299105 3.10E-162 dispersed
Sed10g0374 Sed-Chr10:2256507 Sed13g1017 Sed-Chr13:8299105 5.30E-79 dispersed
Sed10g0957 Sed-Chr10:7825997 Sed13g1017 Sed-Chr13:8299105 5.50E-132 dispersed
Sed13g0946 Sed-Chr13:7171090 Sed13g1017 Sed-Chr13:8299105 4.20E-76 dispersed
Sed13g1017 Sed-Chr13:8299105 Sed14g1158 Sed-Chr14:20964850 1.90E-140 dispersed
Sed13g1039 Sed-Chr13:8513063 Sed13g1017 Sed-Chr13:8299105 2.70E-50 dispersed
Sed13g1016 Sed-Chr13:8275705 Sed13g1017 Sed-Chr13:8299105 3.60E-179 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1017 K00430 - csv:101223204 570.852