Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1026 ATGGCTACGTTTGTGGATCCACCGAATGGAATGAGGTCGACGGGGAAGCATTATTACACAATGTGGCAAACTGTGTTTGAAATTGATACCAAGTATGTTCCAGTGAAGCCGATTGGGCGAGGAGCCTACGGCGTGGTGTGTTCTTCCATCAATCGAGAGACGAACGAGAAAGTGGCGATCAAGAAGATTAACAATGTGTTTGAGAATCGGATCGACGCCATGAGAACGCTGCGGGAGTTGAAGCTTTTGAGGCACATAAGGCATCAGAACGTGATTGCTCTGAAGGATGTTATGATGCCGGTTCATTTAAAAAGCTTCAAGGATGTGTATTTGGTTTATGAGCTCATGGATACTGATCTTCATCAGATTATCAAATCTTCTCAAGCCCTTTCCAATGATCATTGCAAGTATTTTATCTATCAGTTGCTATGCGGCTTGCAGTATCTTCATTCAGCAAACATTCTTCACCGGGACTTGAAGCCCGGGAACCTCCTCGTCAATGCTAACTGTGATCTGAAGATTTGTGATTTTGGGTTGGCACGAACAAGTATAGGCCGCGACGAGTTCATGACTGAGTATGTTGTTACTCGTTGGTATCGCGCACCAGAGCTTCTCCTCTGCTGTGACAACTATGGGACTTCCATTGATGTATGGTCTGTGGGATGCATCTTTGCTGAGATTCTGGGTCGACAACCTATTTTTCCGGGGACAGAGTGCCTCAACCAACTCAACTTAATCATCAACATTCTTGGTAGTCAAAGAGAAGCGGATATTGAGTTCATCGACAATGCAAAGGCCAGAAAGTTTATCAAGGCGATGCCCTTTTCGAGAGGAATACACCTTTCACATCTATATCCGCATGCTGAACCTTTAGCTTTAGACTTGCTGCAGAAGATGCTTGTGTTTGATCCAACGAAGAGAATTACTGTTGATGAAGCACTACAACATCCATACATGTCGGGGCTGTATGACCCGAATCTCAATCCACCGGCTGAGGTTCCACTCACTCTCGACATTAACGAATCACTTGGGGAGCATAAGATCAGGGAAATGATGTTGAATGAGATGCTCTTTTACCATCCTGAAGCTGCTCAAGCCTATTCTTAA 1107 44.72 MATFVDPPNGMRSTGKHYYTMWQTVFEIDTKYVPVKPIGRGAYGVVCSSINRETNEKVAIKKINNVFENRIDAMRTLRELKLLRHIRHQNVIALKDVMMPVHLKSFKDVYLVYELMDTDLHQIIKSSQALSNDHCKYFIYQLLCGLQYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSIGRDEFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRQPIFPGTECLNQLNLIINILGSQREADIEFIDNAKARKFIKAMPFSRGIHLSHLYPHAEPLALDLLQKMLVFDPTKRITVDEALQHPYMSGLYDPNLNPPAEVPLTLDINESLGEHKIREMMLNEMLFYHPEAAQAYS 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8384476 8387256 - Sed0026093.1 Sed13g1026 734536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1026 368 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Sed13g1026 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1026 368 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1026 368 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524(InterPro)
Sed13g1026 368 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1026 368 CDD STKc_TEY_MAPK 26 361 - -
Sed13g1026 368 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1026 368 FunFam Mitogen-activated protein kinase 18 126 - -
Sed13g1026 368 SMART serkin_6 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1026 368 FunFam Mitogen-activated protein kinase 116 345 - -
Sed13g1026 368 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 26 356 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed13g1026 368 Gene3D Phosphorylase Kinase; domain 1 19 352 - -
Sed13g1026 368 SUPERFAMILY Protein kinase-like (PK-like) 24 327 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1377 Sed-Chr10:29667852 Sed13g1026 Sed-Chr13:8384476 1.40E-166 dispersed
Sed11g1055 Sed-Chr11:25856287 Sed13g1026 Sed-Chr13:8384476 9.60E-125 dispersed
Sed13g0649 Sed-Chr13:4381399 Sed13g1026 Sed-Chr13:8384476 2.40E-85 dispersed
Sed13g0650 Sed-Chr13:4391020 Sed13g1026 Sed-Chr13:8384476 7.20E-77 dispersed
Sed13g1026 Sed-Chr13:8384476 Sed03g0602 Sed-Chr3:3642509 1.60E-47 dispersed
Sed13g1026 Sed-Chr13:8384476 Sed07g1662 Sed-Chr7:14213741 1.80E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80091 PF00069 Pkinase 6.80E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1026 K20537 - csv:101203896 667.151