Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed13g1043 | ATGGCTGCCAATTTGACCCTGCTTAAACCCTGTTCTTCGTTTCCAACCACCCCATTTTCCATGAGGAGGAAATTCTGTGCCCCATCTTCCTCTTTTCACCCGCAATGCCGTGGAGGCGCTTATGTTGTTCAATGTGCTTCTTCAAATGGGAAAGAGCTTGATTCCTTGGATCATGGACTTAAAAGTGTGGAGCGGTTACTTGAAGAGAAACAGCTTGCAGAATTGTCTGCTCGAATTGCTTCTGGAGAATTCACAGTCCAAAAGCCTGGATTTTCATCTGTAATAAGAAGTGGCTTGTCAAAGATGGGTGTTCCCGGTGAGATTCTTGACATATTATTTGGTTTTGTCAAAGTTGGAGAAGAATATCCCAAGATTCCTGAAGCAAAAGGATCAATTAATGCGATTCGTAATGAGCCATTCTTCAAACCTCTCTATGATCTTTATCTCACGTATGGTGGAATATTTAGATTGACTTTTGGGCCAAAGTCCTTATTGATAGTATCTGATCCTTCCATTGCTAAGCATATACTGAAGGATAATCCAAAGAATTACTCCAAGGGTATCTTAGCTGAAGTTCTAGACTTTTTCATGGGGAAAGGACTTCTACCAGCTGATGGGGAAATCTGGCGTGTACGAAGACGAGCTATAGTTCCATCTTTGCGTATGAAGTATGTAGGAGCTATGAATAATCTTTTTGGAGAAGCTGCAGACAGGCTTTGCAAGAAGCTGGATGATGCAGCCTCTGATGGGATAGATGTGGAAATGGAGTCTCTCTTCTCCCGTCTGACTTTGGATGTAATTGGGAAGGCAGTTTTTAACTATGATTTCGATTCACTTACAAATGACACTGGCATAGTTGAGGCTGTTTACACTGTGCTAAGAGAAGTAGAAGATCGCATTGCTGTGCCAATTCCTGTATGGGAAATTCCAATTTGGAAGGATATTTCACCACGCCAACAAAAGGTCTCTAAAGCTCTCAAGTTGATCAATGACACCCTCGATCACCTCATTGCTATGTGCAAGAGGATGGTTGATGAGGAGGAGTTGCAGTTTCACGAGGAATGCATGAATGGGAAACATCCTATCATTCTTCATTTCCTTTTGGCATCGGGAGATGATATTTCGAGCAAGCAGCTTCGTGATGACTTGATGACTATGCTTATAGCTGGGCATATAACATCTGCTGCAGTTTTGACATGGACCTTTTATCTTCTTTCCAAGGAACCGAGGATCATGGCCAAGCTTCAAGAGGAGGTTGATTCGGTTCTAGGGGATCGGTTTCCAACTATTGAAGATATGAAGAACCTTAAATATGCCACACGAATAATCAATGAATCCTTGAGGCTTTACCCACAGAAACCAGTTTTAATACGTCGATCTCTTGGCAATGATTTTCTCGGGAAGTACCCAATAAAGAAGGGTGAGGACATATTCATATCGGTTTGGAACTTACATCGTGCTCCAAAACTCTGGGACCATGCTGATCAATTTAATCCAGAAAGGTGGCCCTTGGATGGACCCAATCCAAATGAGACAAATCAAGATTTCAGATATTTGCCTTTTGGAGGTGGACCACGGAAATGTGTGGGTGACATGTTTGCTTCGTACGAGAACATGGTAGCACTTAGCATGCTTGTTCGGCGATTTGACTTTCAAATGGCACTTGGAGCTCCTCCTGTAAAAATGACAACGGGAGCTACAATTCACACAACAGATGGATTGAAAATGACCGTTACACGAAGAATAAAACCTCCAATCATACCTTCATTAGAGATGACTGCAATGGTCCTTGACTCGCCTGTTATTGATTCTTCTATCGAATTCATGAAAGACAAAGCACAAATTGTTCAAGAATGA | 1857 | 42.11 | MAANLTLLKPCSSFPTTPFSMRRKFCAPSSSFHPQCRGGAYVVQCASSNGKELDSLDHGLKSVERLLEEKQLAELSARIASGEFTVQKPGFSSVIRSGLSKMGVPGEILDILFGFVKVGEEYPKIPEAKGSINAIRNEPFFKPLYDLYLTYGGIFRLTFGPKSLLIVSDPSIAKHILKDNPKNYSKGILAEVLDFFMGKGLLPADGEIWRVRRRAIVPSLRMKYVGAMNNLFGEAADRLCKKLDDAASDGIDVEMESLFSRLTLDVIGKAVFNYDFDSLTNDTGIVEAVYTVLREVEDRIAVPIPVWEIPIWKDISPRQQKVSKALKLINDTLDHLIAMCKRMVDEEELQFHEECMNGKHPIILHFLLASGDDISSKQLRDDLMTMLIAGHITSAAVLTWTFYLLSKEPRIMAKLQEEVDSVLGDRFPTIEDMKNLKYATRIINESLRLYPQKPVLIRRSLGNDFLGKYPIKKGEDIFISVWNLHRAPKLWDHADQFNPERWPLDGPNPNETNQDFRYLPFGGGPRKCVGDMFASYENMVALSMLVRRFDFQMALGAPPVKMTTGATIHTTDGLKMTVTRRIKPPIIPSLEMTAMVLDSPVIDSSIEFMKDKAQIVQE | 618 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 8584945 | 8597680 | - | Sed0023390.1 | Sed13g1043 | 734553 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed13g1043 | 618 | PANTHER | CYTOCHROME P450 FAMILY 4 | 136 | 579 | IPR050196 | GO:0009507(PANTHER)|GO:0010291(PANTHER)|GO:0016123(PANTHER) | |
| Sed13g1043 | 618 | Pfam | Cytochrome P450 | 137 | 565 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1043 | 618 | PRINTS | P450 superfamily signature | 441 | 452 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1043 | 618 | PRINTS | P450 superfamily signature | 528 | 539 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1043 | 618 | PRINTS | P450 superfamily signature | 389 | 406 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1043 | 618 | PRINTS | P450 superfamily signature | 519 | 528 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1043 | 618 | Gene3D | Cytochrome P450 | 123 | 587 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1043 | 618 | PRINTS | E-class P450 group I signature | 148 | 167 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1043 | 618 | PRINTS | E-class P450 group I signature | 480 | 504 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1043 | 618 | PRINTS | E-class P450 group I signature | 262 | 280 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1043 | 618 | PRINTS | E-class P450 group I signature | 378 | 395 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1043 | 618 | PRINTS | E-class P450 group I signature | 440 | 458 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1043 | 618 | PRINTS | E-class P450 group I signature | 398 | 424 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1043 | 618 | PRINTS | E-class P450 group I signature | 528 | 551 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1043 | 618 | PRINTS | E-class P450 group I signature | 518 | 528 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1043 | 618 | SUPERFAMILY | Cytochrome P450 | 136 | 581 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1043 | 618 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 521 | 530 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed13g1043 | 618 | CDD | CYP97 | 142 | 575 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed07g1792 | Sed-Chr7:19488532 | Sed13g1043 | Sed-Chr13:8584945 | 0.00E+00 | dispersed | |
| Sed13g1043 | Sed-Chr13:8584945 | Sed13g1059 | Sed-Chr13:9119606 | 0.00E+00 | dispersed | |
| Sed10g0936 | Sed-Chr10:7537527 | Sed13g1043 | Sed-Chr13:8584945 | 4.10E-19 | wgd | |
| Sed13g1043 | Sed-Chr13:8584945 | Sed07g2030 | Sed-Chr7:35267817 | 4.40E-34 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed13g1043 | K15747 | - | csv:101215492 | 1008.44 |