Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1053 ATGGGTTTTGATGATCTTTCCCAAACAGGCTTGGTTTTGGGCTTGGGGCTCTCAGAATTACCAGCTTCTCCAATTATTAACAAGTTGAAGAAGAAGCCTGCTCCTTGCTCCTCTACTTCTCTTGATTTTGAGCCTTGTGCTTTGTCTTTGGGCTTTTTGGGTGACGTCTCGACTCGCTTGAAAGCTGTTGATGCTAACAAGATTGTTGATGCCGATAGCAGCAGCGTGGTGTGTTCTTCGTTCTCGGGAGGCGGCGGAGGTAGGGTTAAAAGGGAGAGAGATCTCAGCAGTGAAGAGGTTGAATTGGAGAGGGTAATTTGTTCCAAAGTTAGTGATGAAGATGAAGATGGTTCTAATACTAGAAAGAAGCTTAGGCTTTCTAAAGAACAATCCGCTTTTTTGGAAGAGAGTTTCAACCAAAATAGCACCATCAACCCGAAGCAAAAACAAGCCTTAGCAAGACAGCTAAATCTACGGCCACGACAAGTCGAAGTATGGTTTCAGAATAGGAGAGCTCGAACTAAACTGAAACAAACAGAGGTAGATTGTGAGTTCTTGAAGAAATGTTGCGAGACGTTGACCGACGAAAATAGAAGACTACAAAAGGAGCTTCAAGAACTTAAGGCGCTAAAGCTAGCGCAGCCGCTGTACATGCACATGCCAGCAGCAACACTAGCGATGTGCCCGTCGTGCGAAAGGGTCAGTGGTGTCGGCCTAGGCAATGACGGTTCGAAAGCTAAATTCTCAATGGCTCCCAAGCCACACTTTTACAACCCCTTCTCCAACTCTTCAGCCGCATGTTAG 804 45.9 MGFDDLSQTGLVLGLGLSELPASPIINKLKKKPAPCSSTSLDFEPCALSLGFLGDVSTRLKAVDANKIVDADSSSVVCSSFSGGGGGRVKRERDLSSEEVELERVICSKVSDEDEDGSNTRKKLRLSKEQSAFLEESFNQNSTINPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMHMPAATLAMCPSCERVSGVGLGNDGSKAKFSMAPKPHFYNPFSNSSAAC 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8970251 8971845 - Sed0006873.1 Sed13g1053 734563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1053 267 CDD homeodomain 121 178 IPR001356 GO:0003677(InterPro)
Sed13g1053 267 SMART halz 177 220 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g1053 267 Pfam Homeobox associated leucine zipper 177 211 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g1053 267 Pfam Homeodomain 121 175 IPR001356 GO:0003677(InterPro)
Sed13g1053 267 SUPERFAMILY Homeodomain-like 112 178 IPR009057 -
Sed13g1053 267 SMART HOX_1 119 181 IPR001356 GO:0003677(InterPro)
Sed13g1053 267 Coils Coil 183 213 - -
Sed13g1053 267 ProSitePatterns 'Homeobox' domain signature. 152 175 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed13g1053 267 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 46 240 IPR050762 -
Sed13g1053 267 Gene3D - 125 175 - -
Sed13g1053 267 ProSiteProfiles 'Homeobox' domain profile. 117 177 IPR001356 GO:0003677(InterPro)
Sed13g1053 267 FunFam Homeobox-leucine zipper protein 18 107 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0764 Sed-Chr10:5393669 Sed13g1053 Sed-Chr13:8970251 1.30E-72 dispersed
Sed12g0039 Sed-Chr12:269598 Sed13g1053 Sed-Chr13:8970251 5.70E-47 dispersed
Sed12g1276 Sed-Chr12:9306669 Sed13g1053 Sed-Chr13:8970251 2.50E-52 dispersed
Sed12g1277 Sed-Chr12:9306669 Sed13g1053 Sed-Chr13:8970251 4.50E-22 dispersed
Sed13g1053 Sed-Chr13:8970251 Sed14g0964 Sed-Chr14:18805674 1.90E-74 dispersed
Sed10g0904 Sed-Chr10:6986567 Sed13g1053 Sed-Chr13:8970251 5.90E-10 wgd
Sed13g1053 Sed-Chr13:8970251 Sed07g1789 Sed-Chr7:19034516 7.30E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40412 PF00046 Homeodomain 4.30E-16 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1053 K09338 - csv:101205848 330.872