Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1059 ATGGCTGCCAATTTGACCCTGCTTAAACCCTGTTCTTCGTTTCCAACCACCCCATTTTCCATGAGGAGGAAATTCTGTGCCCCATCTTCCTCTTTTCACCCGCAATGCCGTGGAGGCGCTTATGTTGTTCAATGTGCTTCTTCAAATGGGAAAGAGCTTGATTCCTTGGATCATGGACTTAAAAGTGTGGAGCGGTTACTTGAAGAGAAACAGCTTGCAGAATTGTCTGCTCGAATTGCTTCCGGAGAATTCACAGTCCAAAAGCCTGGATTTTCATCTGTATTAAGAAGTGGCTTGTCAAAGATGGGTGTTCCCAGTGAGATTCTTGACATATTATTTGGTTTTGTCAAAGTTGGAGAAGAATATCCCAAGATTCCTGAAGCAAAAGGATCAATTAATGCGATTCGTAATGAGCCATTCTTCAAACCTCTCTATGATCTTTATCTCACGTATGGTGGAATATTTAGATTGACTTTTGGGCCAAAGTCTTTTTTGATAGTTTCTGATCCTTCCATTGCTAAGCATATACTGAAGGATAATCCAAAGAATTACTCCAAGGGTATCTTAGCTGAAATTCTAGACTTTGTCATGGGGAAAGGACTTATACCAGCTGATGGGGAAATCTGGCGTGTACGAAGACGAGCTATAGTTCCATCTTTGCATATGAAGTATGTAGGAGCTATGATTAATCTTTTTGGAGAAGCTGCAGACAGGCTTTGCAAGAAGCTGGACGATGCAGCCTCCGATGGGGTAGATGTGGAAATGGAGTCTCTCTTCTCCCGTCTGACTTTGGATATAATTGGGAAGGCGGTTTTTAACTATGATTTTGATTCACTTACAAACGACACGGGCATCGTTGAGGCTGTTTATACTGCTCTAAGAGAAGCAGAAGATCGCAGTATTGCGCCAATTCCAGTATGGGAAATTCCAATTTGGAAGGATATTTCACCACGGCAGAAAAAGGTCTCTAAAGCTCTCAAGTTGATCAATGACACCCTCGATCACCTAATTGCTATATGCAAGAGGATGGTTGACGAGGAGGAGTTGCAGTTTCATGAGGAATACATGAATGAGAAAGATCCTAGCATTCTTCATTTCCTTTTGGCATCGGGAGATGATGTTTCGAGCAAGCAGCTTCGTGATGACTTGATGACTATGCTTATAGCTGGGCATGAAACATCTGCTGCAGTTTTGACATGGACCTTTTATCTTCTTTCCAAGGAACCGAGGATCATGGCCAAGCTTCAAGAGGAGGTTGATTCGGTTCTTGGGGATCGGTTTCCAACTATTGAAGATATGAAGAACCTTAAATATGCCACACGAATAATCAATGAATCCTTGAGGCTTTACCCACAGCCACCAGTTTTAATACGTCGATCTCTAGGCAATGATTTTCTCGGGAAGTACCCAATAAAGAAGGGTGAGGACATATTCATATCGGTTTGGAACTTACATCGTGCTCCAAAACTCTGGGACCATGCTGATCAATTTAATCCAGAAAGGTGGCCCTTGGATGGACCCAATCCAAATGAGACAAATCAAGATTTCAGATATTTGCCTTTTGGAGGTGGACCACGGAAATGTGTGGGTGACATGTTTGCTTCGTACGAGAACATGGTAGCACTTAGCATGCTTGTTCGGCGATTTGACTTTCAAATGGCACTTGGAGCTCCTCCTGTAAAAATGACAACGGGAGCTACAATTCACACAACAGATGGATTGAAAATGACTGTTACACGAAGAATGAAACCTCCAATCATACCTTCATTAGAGATGACTGCAATGGTCCTTGACTCTCCTGTTATTGATTCTTCTATCGAATTCATGAAAGACAAAGCACAAATTGTTCAAGAATGA 1857 42.22 MAANLTLLKPCSSFPTTPFSMRRKFCAPSSSFHPQCRGGAYVVQCASSNGKELDSLDHGLKSVERLLEEKQLAELSARIASGEFTVQKPGFSSVLRSGLSKMGVPSEILDILFGFVKVGEEYPKIPEAKGSINAIRNEPFFKPLYDLYLTYGGIFRLTFGPKSFLIVSDPSIAKHILKDNPKNYSKGILAEILDFVMGKGLIPADGEIWRVRRRAIVPSLHMKYVGAMINLFGEAADRLCKKLDDAASDGVDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTALREAEDRSIAPIPVWEIPIWKDISPRQKKVSKALKLINDTLDHLIAICKRMVDEEELQFHEEYMNEKDPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPRIMAKLQEEVDSVLGDRFPTIEDMKNLKYATRIINESLRLYPQPPVLIRRSLGNDFLGKYPIKKGEDIFISVWNLHRAPKLWDHADQFNPERWPLDGPNPNETNQDFRYLPFGGGPRKCVGDMFASYENMVALSMLVRRFDFQMALGAPPVKMTTGATIHTTDGLKMTVTRRMKPPIIPSLEMTAMVLDSPVIDSSIEFMKDKAQIVQE 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9119606 9127632 + Sed0016380.1 Sed13g1059 734569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1059 618 PRINTS P450 superfamily signature 389 406 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1059 618 PRINTS P450 superfamily signature 441 452 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1059 618 PRINTS P450 superfamily signature 528 539 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1059 618 PRINTS P450 superfamily signature 519 528 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1059 618 SUPERFAMILY Cytochrome P450 136 581 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1059 618 FunFam Carotene epsilon-monooxygenase, chloroplastic 126 583 - -
Sed13g1059 618 Pfam Cytochrome P450 137 565 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1059 618 PANTHER CYTOCHROME P450 FAMILY 4 136 579 IPR050196 GO:0009507(PANTHER)|GO:0010291(PANTHER)|GO:0016123(PANTHER)
Sed13g1059 618 Gene3D Cytochrome P450 123 588 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1059 618 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 521 530 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed13g1059 618 CDD CYP97 142 575 - -
Sed13g1059 618 PRINTS E-class P450 group I signature 440 458 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1059 618 PRINTS E-class P450 group I signature 480 504 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1059 618 PRINTS E-class P450 group I signature 148 167 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1059 618 PRINTS E-class P450 group I signature 398 424 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1059 618 PRINTS E-class P450 group I signature 528 551 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1059 618 PRINTS E-class P450 group I signature 518 528 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1059 618 PRINTS E-class P450 group I signature 378 395 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1043 Sed-Chr13:8584945 Sed13g1059 Sed-Chr13:9119606 0.00E+00 dispersed
Sed13g1059 Sed-Chr13:9119606 Sed14g0358 Sed-Chr14:3687746 7.30E-130 dispersed
Sed13g1059 Sed-Chr13:9119606 Sed13g1060 Sed-Chr13:9119606 1.50E-295 tandem
Sed13g0726 Sed-Chr13:5051897 Sed13g1059 Sed-Chr13:9119606 1.20E-121 transposed
Sed13g1059 Sed-Chr13:9119606 Sed07g1792 Sed-Chr7:19488532 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1059 K15747 - csv:101215492 1048.5