Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed13g1060 | ATGTTGTTCAATGTGCTTCTTCAAATGGGAAAGAGCTTGATTCCTTGGATCATGGACTTAAAAGTGTGGAGCGGTTACTTGAAGAGAAACAGCTTGCAGAATTGTCTGCTCGAATTGCTTCCGGAGAATTCACAGTCCAAAAGCCTGGTTGGAGAAGAATATCCCAAGATTCCTGAAGCAAAAGGATCAATTAATGCGATTCGTAATGAGCCATTCTTCAAACCTCTCTATGATCTTTATCTCACGTATGGTGGAATATTTAGATTGACTTTTGGGCCAAAGTCTTTTTTGATAGTTTCTGATCCTTCCATTGCTAAGCATATACTGAAGGATAATCCAAAGAATTACTCCAAGGGTATCTTAGCTGAAATTCTAGACTTTGTCATGGGGAAAGGACTTATACCAGCTGATGGGGAAATCTGGCGTGTACGAAGACGAGCTATAGTTCCATCTTTGCATATGAAGTATGTAGGAGCTATGATTAATCTTTTTGGAGAAGCTGCAGACAGGCTTTGCAAGAAGCTGGACGATGCAGCCTCCGATGGGGTAGATGTGGAAATGGAGTCTCTCTTCTCCCGTCTGACTTTGGATATAATTGGGAAGGCGGTTTTTAACTATGATTTTGATTCACTTACAAACGACACGGGCATCGTTGAGGCTGTTTATACTGCTCTAAGAGAAGCAGAAGATCGCAGTATTGCGCCAATTCCAGTATGGGAAATTCCAATTTGGAAGGATATTTCACCACGGCAGAAAAAGGTCTCTAAAGCTCTCAAGTTGATCAATGACACCCTCGATCACCTAATTGCTATATGCAAGAGGATGGTTGACGAGGAGGAGTTGCAGTTTCATGAGGAATACATGAATGAGAAAGATCCTAGCATTCTTCATTTCCTTTTGGCATCGGGAGATGATGTTTCGAGCAAGCAGCTTCGTGATGACTTGATGACTATGCTTATAGCTGGGCATGAAACATCTGCTGCAGTTTTGACATGGACCTTTTATCTTCTTTCCAAGGAACCGAGGATCATGGCCAAGCTTCAAGAGGAGGTTGATTCGGTTCTTGGGGATCGGTTTCCAACTATTGAAGATATGAAGAACCTTAAATATGCCACACGAATAATCAATGAATCCTTGAGGCTTTACCCACAGCCACCAGTTTTAATACGTCGATCTCTAGGCAATGATTTTCTCGGGAAGTACCCAATAAAGAAGGGTGAGGACATATTCATATCGGTTTGGAACTTACATCGTGCTCCAAAACTCTGGGACCATGCTGATCAATTTAATCCAGAAAGGTGGCCCTTGGATGGACCCAATCCAAATGAGACAAATCAAGATTTCAGATATTTGCCTTTTGGAGGTGGACCACGGAAATGTGTGGGTGACATGTTTGCTTCGTACGAGAACATGGTAGCACTTAGCATGCTTGTTCGGCGATTTGACTTTCAAATGGCACTTGGAGCTCCTCCTGTAAAAATGACAACGGGAGCTACAATTCACACAACAGATGGATTGAAAATGACTGTTACACGAAGAATGAAACCTCCAATCATACCTTCATTAGAGATGACTGCAATGGTCCTTGACTCTCCTGTTATTGATTCTTCTATCGAATTCATGAAAGACAAAGCACAAATTGTTCAAGAATGA | 1653 | 41.92 | MLFNVLLQMGKSLIPWIMDLKVWSGYLKRNSLQNCLLELLPENSQSKSLVGEEYPKIPEAKGSINAIRNEPFFKPLYDLYLTYGGIFRLTFGPKSFLIVSDPSIAKHILKDNPKNYSKGILAEILDFVMGKGLIPADGEIWRVRRRAIVPSLHMKYVGAMINLFGEAADRLCKKLDDAASDGVDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTALREAEDRSIAPIPVWEIPIWKDISPRQKKVSKALKLINDTLDHLIAICKRMVDEEELQFHEEYMNEKDPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPRIMAKLQEEVDSVLGDRFPTIEDMKNLKYATRIINESLRLYPQPPVLIRRSLGNDFLGKYPIKKGEDIFISVWNLHRAPKLWDHADQFNPERWPLDGPNPNETNQDFRYLPFGGGPRKCVGDMFASYENMVALSMLVRRFDFQMALGAPPVKMTTGATIHTTDGLKMTVTRRMKPPIIPSLEMTAMVLDSPVIDSSIEFMKDKAQIVQE | 550 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 9119606 | 9127632 | + | Sed0016380.2 | Sed13g1060 | 734570 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed13g1060 | 550 | Gene3D | Cytochrome P450 | 55 | 520 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1060 | 550 | SUPERFAMILY | Cytochrome P450 | 68 | 513 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1060 | 550 | Pfam | Cytochrome P450 | 69 | 497 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1060 | 550 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 453 | 462 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed13g1060 | 550 | FunFam | Carotene epsilon-monooxygenase, chloroplastic | 58 | 515 | - | - | |
| Sed13g1060 | 550 | PRINTS | P450 superfamily signature | 460 | 471 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1060 | 550 | PRINTS | P450 superfamily signature | 451 | 460 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1060 | 550 | PRINTS | P450 superfamily signature | 373 | 384 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1060 | 550 | PRINTS | P450 superfamily signature | 321 | 338 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1060 | 550 | CDD | CYP97 | 74 | 507 | - | - | |
| Sed13g1060 | 550 | PANTHER | CYTOCHROME P450 FAMILY 4 | 68 | 511 | IPR050196 | GO:0009507(PANTHER)|GO:0010291(PANTHER)|GO:0016123(PANTHER) | |
| Sed13g1060 | 550 | PRINTS | E-class P450 group I signature | 330 | 356 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1060 | 550 | PRINTS | E-class P450 group I signature | 310 | 327 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1060 | 550 | PRINTS | E-class P450 group I signature | 412 | 436 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1060 | 550 | PRINTS | E-class P450 group I signature | 450 | 460 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1060 | 550 | PRINTS | E-class P450 group I signature | 80 | 99 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1060 | 550 | PRINTS | E-class P450 group I signature | 372 | 390 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1060 | 550 | PRINTS | E-class P450 group I signature | 460 | 483 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed13g0726 | Sed-Chr13:5051897 | Sed13g1060 | Sed-Chr13:9119606 | 1.80E-122 | dispersed | |
| Sed13g1060 | Sed-Chr13:9119606 | Sed14g0358 | Sed-Chr14:3687746 | 8.50E-130 | dispersed | |
| Sed13g1059 | Sed-Chr13:9119606 | Sed13g1060 | Sed-Chr13:9119606 | 1.50E-295 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed13g1060 | K15747 | - | csv:101215492 | 907.131 |