Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1060 ATGTTGTTCAATGTGCTTCTTCAAATGGGAAAGAGCTTGATTCCTTGGATCATGGACTTAAAAGTGTGGAGCGGTTACTTGAAGAGAAACAGCTTGCAGAATTGTCTGCTCGAATTGCTTCCGGAGAATTCACAGTCCAAAAGCCTGGTTGGAGAAGAATATCCCAAGATTCCTGAAGCAAAAGGATCAATTAATGCGATTCGTAATGAGCCATTCTTCAAACCTCTCTATGATCTTTATCTCACGTATGGTGGAATATTTAGATTGACTTTTGGGCCAAAGTCTTTTTTGATAGTTTCTGATCCTTCCATTGCTAAGCATATACTGAAGGATAATCCAAAGAATTACTCCAAGGGTATCTTAGCTGAAATTCTAGACTTTGTCATGGGGAAAGGACTTATACCAGCTGATGGGGAAATCTGGCGTGTACGAAGACGAGCTATAGTTCCATCTTTGCATATGAAGTATGTAGGAGCTATGATTAATCTTTTTGGAGAAGCTGCAGACAGGCTTTGCAAGAAGCTGGACGATGCAGCCTCCGATGGGGTAGATGTGGAAATGGAGTCTCTCTTCTCCCGTCTGACTTTGGATATAATTGGGAAGGCGGTTTTTAACTATGATTTTGATTCACTTACAAACGACACGGGCATCGTTGAGGCTGTTTATACTGCTCTAAGAGAAGCAGAAGATCGCAGTATTGCGCCAATTCCAGTATGGGAAATTCCAATTTGGAAGGATATTTCACCACGGCAGAAAAAGGTCTCTAAAGCTCTCAAGTTGATCAATGACACCCTCGATCACCTAATTGCTATATGCAAGAGGATGGTTGACGAGGAGGAGTTGCAGTTTCATGAGGAATACATGAATGAGAAAGATCCTAGCATTCTTCATTTCCTTTTGGCATCGGGAGATGATGTTTCGAGCAAGCAGCTTCGTGATGACTTGATGACTATGCTTATAGCTGGGCATGAAACATCTGCTGCAGTTTTGACATGGACCTTTTATCTTCTTTCCAAGGAACCGAGGATCATGGCCAAGCTTCAAGAGGAGGTTGATTCGGTTCTTGGGGATCGGTTTCCAACTATTGAAGATATGAAGAACCTTAAATATGCCACACGAATAATCAATGAATCCTTGAGGCTTTACCCACAGCCACCAGTTTTAATACGTCGATCTCTAGGCAATGATTTTCTCGGGAAGTACCCAATAAAGAAGGGTGAGGACATATTCATATCGGTTTGGAACTTACATCGTGCTCCAAAACTCTGGGACCATGCTGATCAATTTAATCCAGAAAGGTGGCCCTTGGATGGACCCAATCCAAATGAGACAAATCAAGATTTCAGATATTTGCCTTTTGGAGGTGGACCACGGAAATGTGTGGGTGACATGTTTGCTTCGTACGAGAACATGGTAGCACTTAGCATGCTTGTTCGGCGATTTGACTTTCAAATGGCACTTGGAGCTCCTCCTGTAAAAATGACAACGGGAGCTACAATTCACACAACAGATGGATTGAAAATGACTGTTACACGAAGAATGAAACCTCCAATCATACCTTCATTAGAGATGACTGCAATGGTCCTTGACTCTCCTGTTATTGATTCTTCTATCGAATTCATGAAAGACAAAGCACAAATTGTTCAAGAATGA 1653 41.92 MLFNVLLQMGKSLIPWIMDLKVWSGYLKRNSLQNCLLELLPENSQSKSLVGEEYPKIPEAKGSINAIRNEPFFKPLYDLYLTYGGIFRLTFGPKSFLIVSDPSIAKHILKDNPKNYSKGILAEILDFVMGKGLIPADGEIWRVRRRAIVPSLHMKYVGAMINLFGEAADRLCKKLDDAASDGVDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTALREAEDRSIAPIPVWEIPIWKDISPRQKKVSKALKLINDTLDHLIAICKRMVDEEELQFHEEYMNEKDPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPRIMAKLQEEVDSVLGDRFPTIEDMKNLKYATRIINESLRLYPQPPVLIRRSLGNDFLGKYPIKKGEDIFISVWNLHRAPKLWDHADQFNPERWPLDGPNPNETNQDFRYLPFGGGPRKCVGDMFASYENMVALSMLVRRFDFQMALGAPPVKMTTGATIHTTDGLKMTVTRRMKPPIIPSLEMTAMVLDSPVIDSSIEFMKDKAQIVQE 550
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 9119606 9127632 + Sed0016380.2 Sed13g1060 734570
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1060 550 Gene3D Cytochrome P450 55 520 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1060 550 SUPERFAMILY Cytochrome P450 68 513 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1060 550 Pfam Cytochrome P450 69 497 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1060 550 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed13g1060 550 FunFam Carotene epsilon-monooxygenase, chloroplastic 58 515 - -
Sed13g1060 550 PRINTS P450 superfamily signature 460 471 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1060 550 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1060 550 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1060 550 PRINTS P450 superfamily signature 321 338 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1060 550 CDD CYP97 74 507 - -
Sed13g1060 550 PANTHER CYTOCHROME P450 FAMILY 4 68 511 IPR050196 GO:0009507(PANTHER)|GO:0010291(PANTHER)|GO:0016123(PANTHER)
Sed13g1060 550 PRINTS E-class P450 group I signature 330 356 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1060 550 PRINTS E-class P450 group I signature 310 327 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1060 550 PRINTS E-class P450 group I signature 412 436 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1060 550 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1060 550 PRINTS E-class P450 group I signature 80 99 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1060 550 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1060 550 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0726 Sed-Chr13:5051897 Sed13g1060 Sed-Chr13:9119606 1.80E-122 dispersed
Sed13g1060 Sed-Chr13:9119606 Sed14g0358 Sed-Chr14:3687746 8.50E-130 dispersed
Sed13g1059 Sed-Chr13:9119606 Sed13g1060 Sed-Chr13:9119606 1.50E-295 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1060 K15747 - csv:101215492 907.131