Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1066 ATGGCTGGGGGAGGAATGATCCGGCAGTTACTGAGGAAATTTTCATCTCAATCGTCTATCCCTCCTTTGACGTCGTCCCTTATTTCAAAGAATGAGGAAGCTGGCTTTGCTAGGATGAACTCCTTTAGAAGGCTTGCGCTCCTTGGAGCAGGCATATCTGGATTTTTCAGTTTTGCAACTTTGGCATCTGCCGATGAGGCAGAACACGGTTTGGAGTGTCCGAACTATCCCTGGCCTCACCAGGGCATTTTGAGTTCATATGATCATGCCTCGGTTCGTCGTGGTCATCAGGTTTACCAACAAGTGTGTGCATCTTGTCATTCTATGTCTTTGATATCATATCGTGATTTGGTTGGTGTTGCATATACCGAAGAGGAGACAAAAGCAATGGCTGCTGAAATTGAGGTAGTTGATGGGCCCAATGATGAGGGTGAGATGTTCACTCGTCCAGGTAAACTTAGTGACCGATTTCCTGAACCATATGCTAATGAACAAGCTGCTAGATTCGCTAATGGTGGAGCTTACCCTCCAGATCTAAGCCTTGTCACAAAGGCTCGCCACAATGGTCAAAATTATGTATTTGCCCTTCTTACTGGTTATCGTGATCCACCTGCTGGTGTTTCGATCAGAGAGGGTCTACACTATAACCCTTATTTCCCTGGTGGAGCAATTGCAATGCCCAAGATGCTTAATGATGGAGCAGTCGAATACGAAGATGGTACCCCTGCGACAGAAGCACAGATGGGGAAAGATGTCGTGTCGTTCTTGTCTTGGGCTGCTGAGCCAGAAATGGAAGAAAGGAAACTGATGGGATTCAAATGGATCTTTGTGCTCTCTCTGGCTCTACTTCAGGCCGCATACTACCGCCGATTGAAGTGGTCGGTTTTCAAGTCTCGCAAGCTGGTTCTTGATGTAGTCAATTAG 924 46.65 MAGGGMIRQLLRKFSSQSSIPPLTSSLISKNEEAGFARMNSFRRLALLGAGISGFFSFATLASADEAEHGLECPNYPWPHQGILSSYDHASVRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPEPYANEQAARFANGGAYPPDLSLVTKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVFKSRKLVLDVVN 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9236715 9242663 - Sed0025997.2 Sed13g1066 734576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1066 307 PRINTS Cytochrome C1 signature 212 223 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Sed13g1066 307 PRINTS Cytochrome C1 signature 141 161 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Sed13g1066 307 PRINTS Cytochrome C1 signature 76 95 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Sed13g1066 307 PRINTS Cytochrome C1 signature 262 277 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Sed13g1066 307 PRINTS Cytochrome C1 signature 174 198 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Sed13g1066 307 PRINTS Cytochrome C1 signature 223 242 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Sed13g1066 307 PRINTS Cytochrome C1 signature 243 262 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Sed13g1066 307 PRINTS Cytochrome C1 signature 96 115 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Sed13g1066 307 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 262 306 IPR021157 -
Sed13g1066 307 SUPERFAMILY Cytochrome c 71 261 IPR036909 GO:0009055(InterPro)|GO:0020037(InterPro)
Sed13g1066 307 Gene3D - 67 262 IPR036909 GO:0009055(InterPro)|GO:0020037(InterPro)
Sed13g1066 307 Pfam Cytochrome C1 family 78 294 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Sed13g1066 307 Gene3D - 263 306 - -
Sed13g1066 307 FunFam Cytochrome c1, heme protein, mitochondrial 263 307 - -
Sed13g1066 307 PANTHER CYTOCHROME C1 17 305 IPR002326 GO:0005750(PANTHER)|GO:0006122(PANTHER)|GO:0009055(InterPro)|GO:0020037(InterPro)
Sed13g1066 307 ProSiteProfiles Cytochrome c family profile. 90 197 IPR009056 GO:0009055(InterPro)|GO:0020037(InterPro)
Sed13g1066 307 FunFam Cytochrome c1, heme protein 67 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1803 Sed-Chr7:20268462 Sed13g1066 Sed-Chr13:9236715 4.20E-171 dispersed
Sed13g1065 Sed-Chr13:9236715 Sed13g1066 Sed-Chr13:9236715 1.00E-177 tandem
Sed13g1066 Sed-Chr13:9236715 Sed13g1067 Sed-Chr13:9236715 1.00E-177 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1066 K00413 - csv:101215010 598.201