Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g1074 | ATGGCTCCGCCCACCAATTGGCTCTCCTTTTCCCTCTCTCCCATTGATATGGACTCTCAATTTCTTCCTTTTCAACCTTCCTCCGCCGCCTCTCCTCACTTCCTCTTCGACAATTTCTACTCTACTAATACTAGTAATGGGTGGAGTAATGGTGGCTCTAATCCTCAACCGAAATCATCGCAACTTTTTTTCATGGATGGAAACCAAAACAACGAAGCTGTGGAAGATCAAGAGCATCAATATCTCGATCATAATCAGCCAACACCCACGATGTTTACGAGCTTTCTTCATCCACAACCGGCGACTCATCCTCAACCGAAGCTCGAGGATTTTCTGGGCGATACGTCGCCGATGATGCGGTATTCCGACAGCCAGACGGACACCCAAGATTCGTCTTTGACTCACATTTACGGCCATGGCTCGGCGGCGGAGGCTGCGGCGGCTGCCTATTTTGGGGGATTTTCCGGCAACTCCGGCTCTGAAGTTGAGGATTCGGGTTCTGTTGGCAGAACCCAGATCGGCGCAGGCGAGATTCCCGGCGGTGGTCGCCCCACTGGCGCTCTGTCCCTCGCCGTCGACACGGCTCCGGCTGTTGTGGCACATGATTCCGATTCTTCTAAGAAAATTGCTGATACCTTTGGTCAGCGAACTTCTATTTACAGAGGAGTCACTAGGCACAGATGGACGGGTAGATACGAAGCGCATCTATGGGACAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGTTTACTTGGGTGGGTATGATAAGGAAGACAAAGCAGCTAGGTCTTATGATTTGGCAGCTTTGAAGTACTGGGGTCCAACTGCAACCACAAATTTTCCTGTTTCGAATTACACCAAAGAATTGGAAGAGATGAAACATGTTACCAAGCAAGAGTTTATCGCTTCTTTGCGAAGGAAAAGCAGCGGTTTCTCGAGGGGTGCATCGATTTACAGAGGTGTAACGAGGCATCATCAGCAGGGTCGATGGCAGGCAAGAATTGGCCGTGTTGCTGGGAATAAAGACCTGTATCTGGGGACATTTGCTACGGAAGAGGAAGCAGCTGAGGCATACGATATAGCAGCGATCAAGTTCAGGGGTTTGAATGCTGTGACGAATTTCGAAATGAACCGATACGATGTGGAAGCTATTTCAAAGAGTGCACTGCCAATCGGGGGAGCTGCCAAAAGGCTGAAGCTTTGCCTTGAATCGGAACAGAAGTCGATTCCAAATCTCGATCAAGCAGCCCAATGTAGTAGTGGAAGGAACATCAACTTTGGTGCAACCATTCAGGCTGCGTCGCCCATCCCCTGTGGAATTCCATACGAAACTGCGGCCATGCTGTATCACCATAATTACTTCCATCATCTTCAACCTAATGTCATTGGTTCTTCCGACTCGACTAGCTCTGCCATTGCAGCTTCGACTGTGGCACCTCAAGCAGCCGATTTTTTTGTTTGGCCTCACCAGTCATATTAG | 1491 | 49.43 | MAPPTNWLSFSLSPIDMDSQFLPFQPSSAASPHFLFDNFYSTNTSNGWSNGGSNPQPKSSQLFFMDGNQNNEAVEDQEHQYLDHNQPTPTMFTSFLHPQPATHPQPKLEDFLGDTSPMMRYSDSQTDTQDSSLTHIYGHGSAAEAAAAAYFGGFSGNSGSEVEDSGSVGRTQIGAGEIPGGGRPTGALSLAVDTAPAVVAHDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDKAARSYDLAALKYWGPTATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMNRYDVEAISKSALPIGGAAKRLKLCLESEQKSIPNLDQAAQCSSGRNINFGATIQAASPIPCGIPYETAAMLYHHNYFHHLQPNVIGSSDSTSSAIAASTVAPQAADFFVWPHQSY | 496 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 9313707 | 9318189 | - | Sed0002629.2 | Sed13g1074 | 734584 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g1074 | 496 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 218 | 287 | - | - | |
Sed13g1074 | 496 | SUPERFAMILY | DNA-binding domain | 218 | 287 | IPR016177 | GO:0003677(InterPro) | |
Sed13g1074 | 496 | CDD | AP2 | 320 | 379 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g1074 | 496 | FunFam | AP2-like ethylene-responsive transcription factor | 320 | 381 | - | - | |
Sed13g1074 | 496 | ProSiteProfiles | AP2/ERF domain profile. | 321 | 379 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g1074 | 496 | Gene3D | AP2/ERF domain | 321 | 381 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g1074 | 496 | Gene3D | AP2/ERF domain | 219 | 287 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g1074 | 496 | SMART | rav1_2 | 219 | 291 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g1074 | 496 | SMART | rav1_2 | 321 | 385 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g1074 | 496 | SUPERFAMILY | DNA-binding domain | 320 | 380 | IPR016177 | GO:0003677(InterPro) | |
Sed13g1074 | 496 | CDD | AP2 | 218 | 287 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g1074 | 496 | Pfam | AP2 domain | 220 | 277 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g1074 | 496 | Pfam | AP2 domain | 322 | 371 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g1074 | 496 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 139 | 418 | - | - | |
Sed13g1074 | 496 | ProSiteProfiles | AP2/ERF domain profile. | 219 | 285 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g1074 | 496 | PRINTS | Ethylene responsive element binding protein signature | 220 | 231 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g1074 | 496 | PRINTS | Ethylene responsive element binding protein signature | 361 | 381 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g1816 | Sed-Chr7:20566170 | Sed13g1074 | Sed-Chr13:9313707 | 2.30E-192 | dispersed | |
Sed12g2212 | Sed-Chr12:32535371 | Sed13g1074 | Sed-Chr13:9313707 | 8.40E-97 | dispersed | |
Sed13g1074 | Sed-Chr13:9313707 | Sed14g0948 | Sed-Chr14:18604434 | 1.00E-89 | dispersed | |
Sed13g1073 | Sed-Chr13:9313707 | Sed13g1074 | Sed-Chr13:9313707 | 1.60E-289 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40415 | PF00847 | AP2 | 3.70E-11 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g1074 | K09285 | - | csv:101217714 | 679.863 |