Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1074 ATGGCTCCGCCCACCAATTGGCTCTCCTTTTCCCTCTCTCCCATTGATATGGACTCTCAATTTCTTCCTTTTCAACCTTCCTCCGCCGCCTCTCCTCACTTCCTCTTCGACAATTTCTACTCTACTAATACTAGTAATGGGTGGAGTAATGGTGGCTCTAATCCTCAACCGAAATCATCGCAACTTTTTTTCATGGATGGAAACCAAAACAACGAAGCTGTGGAAGATCAAGAGCATCAATATCTCGATCATAATCAGCCAACACCCACGATGTTTACGAGCTTTCTTCATCCACAACCGGCGACTCATCCTCAACCGAAGCTCGAGGATTTTCTGGGCGATACGTCGCCGATGATGCGGTATTCCGACAGCCAGACGGACACCCAAGATTCGTCTTTGACTCACATTTACGGCCATGGCTCGGCGGCGGAGGCTGCGGCGGCTGCCTATTTTGGGGGATTTTCCGGCAACTCCGGCTCTGAAGTTGAGGATTCGGGTTCTGTTGGCAGAACCCAGATCGGCGCAGGCGAGATTCCCGGCGGTGGTCGCCCCACTGGCGCTCTGTCCCTCGCCGTCGACACGGCTCCGGCTGTTGTGGCACATGATTCCGATTCTTCTAAGAAAATTGCTGATACCTTTGGTCAGCGAACTTCTATTTACAGAGGAGTCACTAGGCACAGATGGACGGGTAGATACGAAGCGCATCTATGGGACAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGTTTACTTGGGTGGGTATGATAAGGAAGACAAAGCAGCTAGGTCTTATGATTTGGCAGCTTTGAAGTACTGGGGTCCAACTGCAACCACAAATTTTCCTGTTTCGAATTACACCAAAGAATTGGAAGAGATGAAACATGTTACCAAGCAAGAGTTTATCGCTTCTTTGCGAAGGAAAAGCAGCGGTTTCTCGAGGGGTGCATCGATTTACAGAGGTGTAACGAGGCATCATCAGCAGGGTCGATGGCAGGCAAGAATTGGCCGTGTTGCTGGGAATAAAGACCTGTATCTGGGGACATTTGCTACGGAAGAGGAAGCAGCTGAGGCATACGATATAGCAGCGATCAAGTTCAGGGGTTTGAATGCTGTGACGAATTTCGAAATGAACCGATACGATGTGGAAGCTATTTCAAAGAGTGCACTGCCAATCGGGGGAGCTGCCAAAAGGCTGAAGCTTTGCCTTGAATCGGAACAGAAGTCGATTCCAAATCTCGATCAAGCAGCCCAATGTAGTAGTGGAAGGAACATCAACTTTGGTGCAACCATTCAGGCTGCGTCGCCCATCCCCTGTGGAATTCCATACGAAACTGCGGCCATGCTGTATCACCATAATTACTTCCATCATCTTCAACCTAATGTCATTGGTTCTTCCGACTCGACTAGCTCTGCCATTGCAGCTTCGACTGTGGCACCTCAAGCAGCCGATTTTTTTGTTTGGCCTCACCAGTCATATTAG 1491 49.43 MAPPTNWLSFSLSPIDMDSQFLPFQPSSAASPHFLFDNFYSTNTSNGWSNGGSNPQPKSSQLFFMDGNQNNEAVEDQEHQYLDHNQPTPTMFTSFLHPQPATHPQPKLEDFLGDTSPMMRYSDSQTDTQDSSLTHIYGHGSAAEAAAAAYFGGFSGNSGSEVEDSGSVGRTQIGAGEIPGGGRPTGALSLAVDTAPAVVAHDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDKAARSYDLAALKYWGPTATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMNRYDVEAISKSALPIGGAAKRLKLCLESEQKSIPNLDQAAQCSSGRNINFGATIQAASPIPCGIPYETAAMLYHHNYFHHLQPNVIGSSDSTSSAIAASTVAPQAADFFVWPHQSY 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9313707 9318189 - Sed0002629.2 Sed13g1074 734584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1074 496 FunFam AP2-like ethylene-responsive transcription factor ANT 218 287 - -
Sed13g1074 496 SUPERFAMILY DNA-binding domain 218 287 IPR016177 GO:0003677(InterPro)
Sed13g1074 496 CDD AP2 320 379 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1074 496 FunFam AP2-like ethylene-responsive transcription factor 320 381 - -
Sed13g1074 496 ProSiteProfiles AP2/ERF domain profile. 321 379 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1074 496 Gene3D AP2/ERF domain 321 381 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1074 496 Gene3D AP2/ERF domain 219 287 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1074 496 SMART rav1_2 219 291 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1074 496 SMART rav1_2 321 385 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1074 496 SUPERFAMILY DNA-binding domain 320 380 IPR016177 GO:0003677(InterPro)
Sed13g1074 496 CDD AP2 218 287 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1074 496 Pfam AP2 domain 220 277 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1074 496 Pfam AP2 domain 322 371 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1074 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 139 418 - -
Sed13g1074 496 ProSiteProfiles AP2/ERF domain profile. 219 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1074 496 PRINTS Ethylene responsive element binding protein signature 220 231 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1074 496 PRINTS Ethylene responsive element binding protein signature 361 381 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1816 Sed-Chr7:20566170 Sed13g1074 Sed-Chr13:9313707 2.30E-192 dispersed
Sed12g2212 Sed-Chr12:32535371 Sed13g1074 Sed-Chr13:9313707 8.40E-97 dispersed
Sed13g1074 Sed-Chr13:9313707 Sed14g0948 Sed-Chr14:18604434 1.00E-89 dispersed
Sed13g1073 Sed-Chr13:9313707 Sed13g1074 Sed-Chr13:9313707 1.60E-289 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40415 PF00847 AP2 3.70E-11 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1074 K09285 - csv:101217714 679.863