Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1077 ATGGTTCTTGTTGGTTCTTTGCAACTGTCCAATCATCTGGGACTCTGTCGGAATCGTTTGCGGGAAGAAAATATTAAGTTTACCTCTTCGAGCAAGAACACACGGTTATTGAATGCAAGTAGACCAACACCTCTTTTATTTCAGCAGAACTACACTAGGAGCGATTATTTATTTAGCATCAAATGCCCATCCAATTACATTGTGCCTTCTAGATACAGTGGATTCAGGTGTCATTCGTCGTTAATGACAGATCAACCACTGGACCCTCCTGGGATGAAGGCTGTTGTAGTGGCATTGACAAGGTTTTGTAATTTATTAGGTGGTTGTCCTCCTCCAGTCGCTAAGTTGGTTCCTGCAGTTTGTATTATCATGTTTGCTGTATGGGGTCTTGGACCATTTTTACGCTATAGTAGAAGCCTACTCCATGGAGATAATAACTGGAAAAAAAGTCAGACATATAAAGTGACGACCTTGTATCTTCAACCAGTACTGCTATGGACTGGAGCAACACTTATTTGCAGAGCTTTGGATCCAATAGTTTTACCTACATATTCTGGCCAAATTGTGAAGCAACGGGCATTGAATTTTGTTAGGTCGCTGTCTACTGTGCTGGCTTTTGCGTATTTCATATCGAATATGATTCAACAAGCACAGAAGTTCTTCTCAGAGACTAATGACGCCAGTGATGCCAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCTGCAGTATGGGTTGCTGCTGTTGCACTGTTCATGGAGTTGTTGGGCTTTTCTACCCAAAAATGGCTTACAGCCGGAGGTCTTGGGACTGTGTTGCTGACATTAGCTGGCCGTGAGATTTTCACCAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGTCCGTTTGTTGTTAATGAGTGGATTCAAACAAAGATTGAGGGCTACGAAGTTTCTGGCTTTGTTGAGCATGTAGGATGGTGGTCACCAACAATTATCAGAGGCGAAGATCGTGAAGCAATTCACATACCGAACCATAAGTTTACTGTGAACGTGGTGAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTAGCCATCAGCCATTTGGACGTCAATAAAATCAATAATATTGTGGCAGACATGCGGAAAGTCTTGGCAAAGAACCCCCAAGTTGAGCAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTGGATCCTGAAAATCAGGCACTCTTGATTTTGATATCTTGTTTTGTCAAGACTTCACATTTTGAAGAATACCTTTGTGTCAAGGAAGCTATAGTTTTGGATCTTCTGACAGTCATTAGACATCACCGGGCAAGACTTGCAACACCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACTTAGACAGTGTTCCATTCTCTGATTCAATATTTGGTAGTAGCCGGATGACTTTGAATCGCCGCATGCTGATGATCGAACCTCCCTACAAAATTTATGGAGAAGATAAAAAACAAAGCCATAGTAAGACATCACGCACAACTGGAGAACAAAACAGTAAGTCGAATTCACGGTCGTCAGGCGACAACAAGGCAGCTAAAGAGATGACATCGTCAGATAGAAAGATGGAAGGAAAAACAGGTGAAGTACGAGACTCTGATACAAAGAAGCATCCCAAAGTTTCAATGTCAACCTCTGAAGATAAATCAAACAATGAATCGAAACATAAATCACCGTCATGGCCTGCGTCGAGTACAAATGATACCTCTGATATGCCTACTTCTGATGCCAAAACAACTAAATCAAATTCAGATAGTTCATTCGAGGGTTCCGGTTCCGAGCAATCCAAAAAGAGCTGGGGAAGTAACAAACAGAACCAAAATTCTTCCCATTCTACTGTTTCCTTTCCGGAAGATGTTAAGAAACCAGGAGGATCTACAGCAGCAGCTTCACAGCCAAGGATAGAAGATGAACAGACACCAGTTTCAAGTCCATCAATAGTGAAGCCTCGTGTAGAAGAGAATATAATCCTTGGTGTAGCTTTGGATGGCTCTAAGAGAACACTTCCTATTGAGGAGGTCATGCCTTCTCCTCCTCAAACCTCATCGAGCGCGAAAGATGTGGCTGCTCTCTGTAATGTGAATGTGGCAAATGGAGCAATAACTCCGGATAAGGATGCGAAACGACAAGCTCCATCTTCTCCTACCACATCTTCTAGTGATTAG 2217 42.22 MVLVGSLQLSNHLGLCRNRLREENIKFTSSSKNTRLLNASRPTPLLFQQNYTRSDYLFSIKCPSNYIVPSRYSGFRCHSSLMTDQPLDPPGMKAVVVALTRFCNLLGGCPPPVAKLVPAVCIIMFAVWGLGPFLRYSRSLLHGDNNWKKSQTYKVTTLYLQPVLLWTGATLICRALDPIVLPTYSGQIVKQRALNFVRSLSTVLAFAYFISNMIQQAQKFFSETNDASDARNMGFQFAWKAVYSAVWVAAVALFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGFVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDPENQALLILISCFVKTSHFEEYLCVKEAIVLDLLTVIRHHRARLATPIRTMQKMHSDSDLDSVPFSDSIFGSSRMTLNRRMLMIEPPYKIYGEDKKQSHSKTSRTTGEQNSKSNSRSSGDNKAAKEMTSSDRKMEGKTGEVRDSDTKKHPKVSMSTSEDKSNNESKHKSPSWPASSTNDTSDMPTSDAKTTKSNSDSSFEGSGSEQSKKSWGSNKQNQNSSHSTVSFPEDVKKPGGSTAAASQPRIEDEQTPVSSPSIVKPRVEENIILGVALDGSKRTLPIEEVMPSPPQTSSSAKDVAALCNVNVANGAITPDKDAKRQAPSSPTTSSSD 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9359658 9378018 + Sed0009560.1 Sed13g1077 734587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1077 738 Gene3D - 299 354 IPR023408 -
Sed13g1077 738 MobiDBLite consensus disorder prediction 716 738 - -
Sed13g1077 738 MobiDBLite consensus disorder prediction 496 665 - -
Sed13g1077 738 Gene3D - 195 297 - -
Sed13g1077 738 MobiDBLite consensus disorder prediction 573 633 - -
Sed13g1077 738 MobiDBLite consensus disorder prediction 531 572 - -
Sed13g1077 738 Pfam Mechanosensitive ion channel, beta-domain 283 353 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed13g1077 738 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Sed13g1077 738 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 705 IPR045042 -
Sed13g1077 738 MobiDBLite consensus disorder prediction 649 663 - -
Sed13g1077 738 MobiDBLite consensus disorder prediction 509 530 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1077 K22047 - - csv:101217250 1080.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1409 Sed-Chr3:8957726 Sed13g1077 Sed-Chr13:9359658 7.80E-192 dispersed
Sed04g0205 Sed-Chr4:1513413 Sed13g1077 Sed-Chr13:9359658 7.70E-189 dispersed
Sed13g1077 Sed-Chr13:9359658 Sed13g1079 Sed-Chr13:9359887 0.00E+00 dispersed
Sed13g1077 Sed-Chr13:9359658 Sed13g1078 Sed-Chr13:9359658 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g0157 . 153 541 Mechanosensitive Ion Channel Family AT4G00290 66.8 1.0e-150 531.2
Sed12g0158 . 153 398 Mechanosensitive Ion Channel Family AT4G00290 65.9 8.6e-89 325.5
Sed13g1078 . 9 725 Mechanosensitive Ion Channel Family AT5G10490 55.7 1.6e-194 677.2
Sed13g1077 . 9 725 Mechanosensitive Ion Channel Family AT5G10490 55.7 1.6e-194 677.2
Sed13g1079 . 9 725 Mechanosensitive Ion Channel Family AT5G10490 55.7 1.6e-194 677.2
Sed04g0205 . 15 663 Mechanosensitive Ion Channel Family AT5G10490 58.4 1.1e-192 671.0
Sed03g1409 . 27 706 Mechanosensitive Ion Channel Family AT5G10490 55.6 3.3e-192 669.5
Sed03g1410 . 27 710 Mechanosensitive Ion Channel Family AT5G10490 55.3 1.8e-190 663.7
Sed04g0205 . 15 661 Mechanosensitive Ion Channel Family AT1G58200 55.9 1.6e-194 677.2
Sed03g1409 . 10 686 Mechanosensitive Ion Channel Family AT1G58200 54.5 4.2e-187 652.5
Sed03g1410 . 10 690 Mechanosensitive Ion Channel Family AT1G58200 54.2 2.3e-185 646.7
Sed13g1078 . 52 690 Mechanosensitive Ion Channel Family AT1G58200 54.3 5.9e-173 605.5
Sed13g1077 . 52 690 Mechanosensitive Ion Channel Family AT1G58200 54.3 5.9e-173 605.5
Sed13g1079 . 52 690 Mechanosensitive Ion Channel Family AT1G58200 54.3 5.9e-173 605.5
Sed05g3519 . 41 903 Mechanosensitive Ion Channel Family AT1G53470 56.7 2.9e-265 912.5
Sed01g0647 . 45 883 Mechanosensitive Ion Channel Family AT1G53470 55.0 1.1e-251 867.5
Sed04g3825 . 76 916 Mechanosensitive Ion Channel Family AT1G53470 51.0 8.0e-231 798.1
Sed05g2203 . 63 907 Mechanosensitive Ion Channel Family AT1G53470 50.2 4.4e-229 792.3
Sed05g3520 . 41 645 Mechanosensitive Ion Channel Family AT1G53470 52.1 1.7e-156 551.2
Sed05g3519 . 41 898 Mechanosensitive Ion Channel Family AT3G14810 52.5 4.7e-236 815.5
Sed01g0647 . 68 878 Mechanosensitive Ion Channel Family AT3G14810 54.7 3.1e-232 802.7
Sed05g3519 . 49 903 Mechanosensitive Ion Channel Family AT1G78610 58.8 6.3e-273 937.9
Sed01g0647 . 49 883 Mechanosensitive Ion Channel Family AT1G78610 57.4 1.6e-268 923.3
Sed05g2203 . 62 913 Mechanosensitive Ion Channel Family AT1G78610 54.4 1.4e-251 867.1
Sed04g3825 . 68 915 Mechanosensitive Ion Channel Family AT1G78610 54.5 2.0e-247 853.2
Sed01g2461 . 112 689 Mechanosensitive Ion Channel Family AT1G78610 50.6 6.3e-164 575.9
Sed05g3520 . 49 645 Mechanosensitive Ion Channel Family AT1G78610 53.9 2.9e-161 567.0
Sed05g3519 . 193 899 Mechanosensitive Ion Channel Family AT2G17000 60.4 3.1e-232 802.7
Sed01g0647 . 191 879 Mechanosensitive Ion Channel Family AT2G17000 61.1 1.1e-229 794.3
Sed05g2203 . 165 902 Mechanosensitive Ion Channel Family AT2G17000 54.6 1.4e-216 750.7
Sed04g3825 . 248 917 Mechanosensitive Ion Channel Family AT2G17000 56.9 9.8e-210 728.0
Sed05g3520 . 193 645 Mechanosensitive Ion Channel Family AT2G17000 57.2 1.1e-131 468.8
Sed05g2203 . 4 656 Mechanosensitive Ion Channel Family AT2G17010 50.5 4.3e-160 562.8
Sed05g3519 . 1 642 Mechanosensitive Ion Channel Family AT2G17010 50.9 2.1e-154 543.9
Sed05g3520 . 1 642 Mechanosensitive Ion Channel Family AT2G17010 50.9 2.1e-154 543.9
Sed01g0647 . 1 622 Mechanosensitive Ion Channel Family AT2G17010 50.1 2.4e-150 530.4
Sed05g1786 . 77 728 Mechanosensitive Ion Channel Family AT5G19520 51.1 1.3e-178 624.4
Sed05g1787 . 77 728 Mechanosensitive Ion Channel Family AT5G19520 51.1 1.3e-178 624.4
Sed05g1789 . 77 728 Mechanosensitive Ion Channel Family AT5G19520 51.1 1.3e-178 624.4
Sed08g0903 . 60 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 2.7e-200 696.4
Sed08g0904 . 60 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 2.7e-200 696.4
Sed08g0905 . 60 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 2.7e-200 696.4
Sed12g1723 . 48 732 Mechanosensitive Ion Channel Family AT5G12080 53.7 8.0e-200 694.9
Sed05g1786 . 72 728 Mechanosensitive Ion Channel Family AT5G12080 55.0 4.0e-191 666.0
Sed05g1787 . 72 728 Mechanosensitive Ion Channel Family AT5G12080 55.0 4.0e-191 666.0
Sed05g1789 . 72 728 Mechanosensitive Ion Channel Family AT5G12080 55.0 4.0e-191 666.0
Sed13g1901 . 69 714 Mechanosensitive Ion Channel Family AT5G12080 53.8 2.3e-183 640.2
Sed13g1900 . 69 714 Mechanosensitive Ion Channel Family AT5G12080 52.4 1.0e-175 614.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71