Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1077 ATGGTTCTTGTTGGTTCTTTGCAACTGTCCAATCATCTGGGACTCTGTCGGAATCGTTTGCGGGAAGAAAATATTAAGTTTACCTCTTCGAGCAAGAACACACGGTTATTGAATGCAAGTAGACCAACACCTCTTTTATTTCAGCAGAACTACACTAGGAGCGATTATTTATTTAGCATCAAATGCCCATCCAATTACATTGTGCCTTCTAGATACAGTGGATTCAGGTGTCATTCGTCGTTAATGACAGATCAACCACTGGACCCTCCTGGGATGAAGGCTGTTGTAGTGGCATTGACAAGGTTTTGTAATTTATTAGGTGGTTGTCCTCCTCCAGTCGCTAAGTTGGTTCCTGCAGTTTGTATTATCATGTTTGCTGTATGGGGTCTTGGACCATTTTTACGCTATAGTAGAAGCCTACTCCATGGAGATAATAACTGGAAAAAAAGTCAGACATATAAAGTGACGACCTTGTATCTTCAACCAGTACTGCTATGGACTGGAGCAACACTTATTTGCAGAGCTTTGGATCCAATAGTTTTACCTACATATTCTGGCCAAATTGTGAAGCAACGGGCATTGAATTTTGTTAGGTCGCTGTCTACTGTGCTGGCTTTTGCGTATTTCATATCGAATATGATTCAACAAGCACAGAAGTTCTTCTCAGAGACTAATGACGCCAGTGATGCCAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCTGCAGTATGGGTTGCTGCTGTTGCACTGTTCATGGAGTTGTTGGGCTTTTCTACCCAAAAATGGCTTACAGCCGGAGGTCTTGGGACTGTGTTGCTGACATTAGCTGGCCGTGAGATTTTCACCAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGTCCGTTTGTTGTTAATGAGTGGATTCAAACAAAGATTGAGGGCTACGAAGTTTCTGGCTTTGTTGAGCATGTAGGATGGTGGTCACCAACAATTATCAGAGGCGAAGATCGTGAAGCAATTCACATACCGAACCATAAGTTTACTGTGAACGTGGTGAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTAGCCATCAGCCATTTGGACGTCAATAAAATCAATAATATTGTGGCAGACATGCGGAAAGTCTTGGCAAAGAACCCCCAAGTTGAGCAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTGGATCCTGAAAATCAGGCACTCTTGATTTTGATATCTTGTTTTGTCAAGACTTCACATTTTGAAGAATACCTTTGTGTCAAGGAAGCTATAGTTTTGGATCTTCTGACAGTCATTAGACATCACCGGGCAAGACTTGCAACACCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACTTAGACAGTGTTCCATTCTCTGATTCAATATTTGGTAGTAGCCGGATGACTTTGAATCGCCGCATGCTGATGATCGAACCTCCCTACAAAATTTATGGAGAAGATAAAAAACAAAGCCATAGTAAGACATCACGCACAACTGGAGAACAAAACAGTAAGTCGAATTCACGGTCGTCAGGCGACAACAAGGCAGCTAAAGAGATGACATCGTCAGATAGAAAGATGGAAGGAAAAACAGGTGAAGTACGAGACTCTGATACAAAGAAGCATCCCAAAGTTTCAATGTCAACCTCTGAAGATAAATCAAACAATGAATCGAAACATAAATCACCGTCATGGCCTGCGTCGAGTACAAATGATACCTCTGATATGCCTACTTCTGATGCCAAAACAACTAAATCAAATTCAGATAGTTCATTCGAGGGTTCCGGTTCCGAGCAATCCAAAAAGAGCTGGGGAAGTAACAAACAGAACCAAAATTCTTCCCATTCTACTGTTTCCTTTCCGGAAGATGTTAAGAAACCAGGAGGATCTACAGCAGCAGCTTCACAGCCAAGGATAGAAGATGAACAGACACCAGTTTCAAGTCCATCAATAGTGAAGCCTCGTGTAGAAGAGAATATAATCCTTGGTGTAGCTTTGGATGGCTCTAAGAGAACACTTCCTATTGAGGAGGTCATGCCTTCTCCTCCTCAAACCTCATCGAGCGCGAAAGATGTGGCTGCTCTCTGTAATGTGAATGTGGCAAATGGAGCAATAACTCCGGATAAGGATGCGAAACGACAAGCTCCATCTTCTCCTACCACATCTTCTAGTGATTAG 2217 42.22 MVLVGSLQLSNHLGLCRNRLREENIKFTSSSKNTRLLNASRPTPLLFQQNYTRSDYLFSIKCPSNYIVPSRYSGFRCHSSLMTDQPLDPPGMKAVVVALTRFCNLLGGCPPPVAKLVPAVCIIMFAVWGLGPFLRYSRSLLHGDNNWKKSQTYKVTTLYLQPVLLWTGATLICRALDPIVLPTYSGQIVKQRALNFVRSLSTVLAFAYFISNMIQQAQKFFSETNDASDARNMGFQFAWKAVYSAVWVAAVALFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGFVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDPENQALLILISCFVKTSHFEEYLCVKEAIVLDLLTVIRHHRARLATPIRTMQKMHSDSDLDSVPFSDSIFGSSRMTLNRRMLMIEPPYKIYGEDKKQSHSKTSRTTGEQNSKSNSRSSGDNKAAKEMTSSDRKMEGKTGEVRDSDTKKHPKVSMSTSEDKSNNESKHKSPSWPASSTNDTSDMPTSDAKTTKSNSDSSFEGSGSEQSKKSWGSNKQNQNSSHSTVSFPEDVKKPGGSTAAASQPRIEDEQTPVSSPSIVKPRVEENIILGVALDGSKRTLPIEEVMPSPPQTSSSAKDVAALCNVNVANGAITPDKDAKRQAPSSPTTSSSD 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9359658 9378018 + Sed0009560.1 Sed13g1077 734587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1077 738 Gene3D - 299 354 IPR023408 -
Sed13g1077 738 MobiDBLite consensus disorder prediction 716 738 - -
Sed13g1077 738 MobiDBLite consensus disorder prediction 496 665 - -
Sed13g1077 738 Gene3D - 195 297 - -
Sed13g1077 738 MobiDBLite consensus disorder prediction 573 633 - -
Sed13g1077 738 MobiDBLite consensus disorder prediction 531 572 - -
Sed13g1077 738 Pfam Mechanosensitive ion channel, beta-domain 283 353 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed13g1077 738 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Sed13g1077 738 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 705 IPR045042 -
Sed13g1077 738 MobiDBLite consensus disorder prediction 649 663 - -
Sed13g1077 738 MobiDBLite consensus disorder prediction 509 530 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1409 Sed-Chr3:8957726 Sed13g1077 Sed-Chr13:9359658 7.80E-192 dispersed
Sed04g0205 Sed-Chr4:1513413 Sed13g1077 Sed-Chr13:9359658 7.70E-189 dispersed
Sed13g1077 Sed-Chr13:9359658 Sed13g1079 Sed-Chr13:9359887 0.00E+00 dispersed
Sed13g1077 Sed-Chr13:9359658 Sed13g1078 Sed-Chr13:9359658 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1077 K22047 - csv:101217250 1080.47