Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1088 ATGGAGGGAATGTCGCACCCAAATCCCCGCACAGTGGATGAGGTCTACAACGACTTCAAAGGCCGACGCGCCGGCTTGATCAAAGCCCTCACTGCTGATGTTGAGAAGTCCTTACAGCAATGCGATCCTGAAAAGGAGAACCTGTGTCTCTATGGACTACCCAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCCCCTGAGCTTCCTGAACCAGCATTAGGTATAAACTTTGCAAGGGATGGGATGGACGAGAAAGATTGGTTATCGCTGGTTGCAGTTCACAGTGACTCATGGTTGCTCGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGATGAGGCTATTCCAGCTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTAAGTGGAAATGGTACGCAGTCAAAAGAACAGTCTGCCACTCTTAACAATAGCAGCAAAAGCAAGTCGAGTGGGAAGCTGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGACGAAGAAGATAGCGGAGAAGACGATGAACAAGGTGCAACGTGTGGGGCTTGTGGGGACAACTACGGCAACCACAAATTCTGGATTTGTTGCGATATATGTGAAAGATGGTTCCATGGAAAATGTGTGAGGATTACACCTGCCAAGGCCGAACATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGA 726 48.07 MEGMSHPNPRTVDEVYNDFKGRRAGLIKALTADVEKSLQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMDEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKMRLFQLINDLPSVFEVVSGNGTQSKEQSATLNNSSKSKSSGKLSHSKGVKMSPPPKDEEDSGEDDEQGATCGACGDNYGNHKFWICCDICERWFHGKCVRITPAKAEHIKQYKCPSCSNKRARV 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9707195 9718705 + Sed0000062.1 Sed13g1088 734598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1088 241 MobiDBLite consensus disorder prediction 141 163 - -
Sed13g1088 241 Pfam PHD-finger 188 234 IPR019787 -
Sed13g1088 241 CDD PHD_AL_plant 188 237 IPR044104 -
Sed13g1088 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
Sed13g1088 241 SMART PHD_3 187 235 IPR001965 -
Sed13g1088 241 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
Sed13g1088 241 PANTHER CPG BINDING PROTEIN 8 240 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Sed13g1088 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Sed13g1088 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Sed13g1088 241 FunFam PHD finger alfin-like protein 180 236 - -
Sed13g1088 241 MobiDBLite consensus disorder prediction 141 183 - -
Sed13g1088 241 Pfam Alfin 11 135 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1863 Sed-Chr7:27484751 Sed13g1088 Sed-Chr13:9707195 1.60E-115 dispersed
Sed07g1864 Sed-Chr7:27484751 Sed13g1088 Sed-Chr13:9707195 2.80E-115 dispersed
Sed11g0863 Sed-Chr11:20748200 Sed13g1088 Sed-Chr13:9707195 6.50E-88 dispersed
Sed13g1088 Sed-Chr13:9707195 Sed07g1860 Sed-Chr7:26902173 8.90E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40417 PF12165 Alfin 1.90E-62 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1088 K26274 - csv:101212601 404.445