Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed13g1106 | ATGGACCACAGCTGCGACCACGCCGGCGATGCCTCGCTTGCCGCTGATCGGGACTCAGGATCGGTGTTCTTGACGCTTAGCGAGCCGCTGTTGCGGACCAGTACGGCCAGGATCAGTACCACCTCCCAGCTCGCCATTGTTGGCTCCAATATCTGCCCCATTGAGAGCCTCGACTATGAGATTATTGAGAATGACCTTTTCAAACAAGACTGGAGGTCCAGAAAGAAGATCGAGATATATCAGTATATTATCCTCAAATGGGCACTGTGCCTTCTCATTGGTTTAATTACAGGGCTTGTTGGCTTCTTCAACAACATAGCTGTTGAGAATATTGCTGGTTTTAAACTTGTGCTGACGAACAATCTCATGCTCAAGGAAAAGTACTATCAGGCCTTTGCAGTGTATGTTGGTTCCAATATTGTTTTAGCTTTTGCTGCTGCAGTGCTCTGTGCCTATATTGCTCCTGCTGCTGCAGGTTCTGGCATACCTGAGGTGAAAGCATATCTCAATGGTATAGATGCTTATTCTATATTGGCTCCAAGTACCTTATTTGTGAAGATTTTTGGTTCTATATTTGCCGTTGCCGGCGGATTCGTTGTGGGTAAGGAGGGACCCATGGTTCACACTGGTGCATGCATTGCCTCATTACTAGGACAAGGAGGCTCTCGCAAATATCGCTTGACCTGGAAGTGGCTGAGATACTTCAAAAATGATAGGGACAGGCGAGATTTGATCACTTGTGGTGCAGGAGCTGGTGTCGCAGCTGCCTTTCGAGCTCCTGTTGGTGGTGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTCTGGAGGACCTTTTTCACTACTGCTGTAGTGGCTGTTGTCTTGAGGAGTTTCATGGAATTTTGCCGAGGAGGAAAATGCGGGTTATTTGGTGAAGGAGGTCTCATCATGTTTGACATCGATACAGAAAACTCTACTTATGGCACTCCAGACCTTATTGCAATTGTTTTACTTGGAGTTATTGGTGGTGTGTTTGGAAGCCTTTACAACTACCTCGTGGATAAGGTCCTCCGAACCTACAGTATCATAAATGAGAGAGGTCCCGGATCGAAAGTCATCCTTGTTGTTGGCATTTCCTTATTAACAACATGTGTCTCATTTGGTCTTCCTTGGTTCTCACAATGTTTACCTTGCCCATCTGACTTGGCAGATGAATGTCCAACCATTGGTCGGTCAGGAAACTACAAGAACTTCCAATGCCCACCTGGGCACTATAATGATCTTGCTTCTTTATTTTTTAATACCAACGATGATGCCATCCGGAACCTGTTTACATCTGCTATTGACAAGCAGTTTCGGTTCTCCTCACTTTTTATCTTCTTTGTTGCTATCTATTTTCTTGGCATTATCACTTATGGCATTGCTGTGCCCTCGGGGCTCTTCATTCCTGTAATACTGGCCGGAGCCTCTTATGGTCGCATTGTAGGGAGATTATTTGGTTCAGTTGCCAACCTTGATGTCAGCCTCTATGCCCTTCTCGGAGCAGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTATGTGTCATACTCCTTGAGCTGACTAATAATCTTTTGATGCTCCCATTACTAATGTTGGTTCTTCTAATTTCGAAGTCGGTGGCAGATATTTTTAACAAAGGTGTCTATGATCAGATCGTGAAGATGAAGGGACTACCTTTTATGGAAGCCCATGCCGAACCATTTATGAGGCAGTTGGTTGCTGGTGGCGTGGCTTCTGGTCCCTTAGTTACATTCTCTGGGATCGAAAAGGTCGACAACATTATTCACGCTTTGAAAATGACAAACCACAATGGGTTTCCTGTAATTGACGAACCGCCTTTCTCAGATAGTTCAGAGCTTTGTGGGCTTGTTCTAAGGTCCCATTTGCTTGTTTTGCTTAAAGAGAAAAAATTTACAAAGAAAAAGTCGTCAATTAGAACAGATATTTTGAGGAGCTTCAAAGCACATGATTTTGCAAAACCTGGTTCTGGCAAAGGGGTGAAACTGGAAGATTTGGACATTAACGAGGAGGAGATGGAAATGTTTGTCGATCTTCATCCCATTACAAATACATCGCCCTACACAGTGGTAGAAACAATGTCGCTAGCTAAAGCGTCAATTCTCTTTCATGCGCTTGGTTTGAGGCACTTATTGGTGGTTCCGAAGACACCCGGGAGGCCTCCTATTGCTGGAATTCTGACCAGACATGACTTCATGCCTGAGCATATTCAGGGGCTTTACCCGCATCTCAAACTCCATTAG | 2307 | 44.99 | MDHSCDHAGDASLAADRDSGSVFLTLSEPLLRTSTARISTTSQLAIVGSNICPIESLDYEIIENDLFKQDWRSRKKIEIYQYIILKWALCLLIGLITGLVGFFNNIAVENIAGFKLVLTNNLMLKEKYYQAFAVYVGSNIVLAFAAAVLCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAGAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSFMEFCRGGKCGLFGEGGLIMFDIDTENSTYGTPDLIAIVLLGVIGGVFGSLYNYLVDKVLRTYSIINERGPGSKVILVVGISLLTTCVSFGLPWFSQCLPCPSDLADECPTIGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRNLFTSAIDKQFRFSSLFIFFVAIYFLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVANLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLVTFSGIEKVDNIIHALKMTNHNGFPVIDEPPFSDSSELCGLVLRSHLLVLLKEKKFTKKKSSIRTDILRSFKAHDFAKPGSGKGVKLEDLDINEEEMEMFVDLHPITNTSPYTVVETMSLAKASILFHALGLRHLLVVPKTPGRPPIAGILTRHDFMPEHIQGLYPHLKLH | 768 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 10076534 | 10096737 | - | Sed0006545.1 | Sed13g1106 | 734616 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed13g1106 | 768 | CDD | ClC_6_like | 55 | 576 | - | - | |
| Sed13g1106 | 768 | PRINTS | Chloride channel signature | 186 | 205 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed13g1106 | 768 | PRINTS | Chloride channel signature | 475 | 495 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed13g1106 | 768 | PRINTS | Chloride channel signature | 155 | 172 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed13g1106 | 768 | PRINTS | Chloride channel signature | 507 | 523 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed13g1106 | 768 | PRINTS | Chloride channel signature | 563 | 577 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed13g1106 | 768 | PRINTS | Chloride channel signature | 525 | 544 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed13g1106 | 768 | PRINTS | Chloride channel signature | 250 | 269 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed13g1106 | 768 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 39 | 757 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Sed13g1106 | 768 | SUPERFAMILY | Clc chloride channel | 64 | 578 | IPR014743 | - | |
| Sed13g1106 | 768 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 579 | 756 | - | - | |
| Sed13g1106 | 768 | Gene3D | - | 601 | 741 | IPR046342 | - | |
| Sed13g1106 | 768 | Pfam | CBS domain | 704 | 754 | IPR000644 | - | |
| Sed13g1106 | 768 | SUPERFAMILY | CBS-domain pair | 580 | 754 | IPR046342 | - | |
| Sed13g1106 | 768 | PRINTS | Plant CLC chloride channel signature | 60 | 68 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed13g1106 | 768 | PRINTS | Plant CLC chloride channel signature | 427 | 443 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed13g1106 | 768 | PRINTS | Plant CLC chloride channel signature | 303 | 310 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed13g1106 | 768 | PRINTS | Plant CLC chloride channel signature | 271 | 279 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed13g1106 | 768 | PRINTS | Plant CLC chloride channel signature | 285 | 295 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed13g1106 | 768 | ProSiteProfiles | CBS domain profile. | 703 | 767 | IPR000644 | - | |
| Sed13g1106 | 768 | FunFam | Chloride channel ClC3 | 78 | 394 | - | - | |
| Sed13g1106 | 768 | Pfam | Voltage gated chloride channel | 143 | 556 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed13g1106 | 768 | Gene3D | Clc chloride channel | 78 | 577 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g0738 | Sed-Chr3:4437821 | Sed13g1106 | Sed-Chr13:10076534 | 1.90E-231 | dispersed | |
| Sed03g0739 | Sed-Chr3:4437821 | Sed13g1106 | Sed-Chr13:10076534 | 9.90E-202 | dispersed | |
| Sed04g1887 | Sed-Chr4:33569880 | Sed13g1106 | Sed-Chr13:10076534 | 2.10E-187 | dispersed | |
| Sed09g0770 | Sed-Chr9:14987461 | Sed13g1106 | Sed-Chr13:10076534 | 8.40E-163 | dispersed | |
| Sed10g1467 | Sed-Chr10:31054188 | Sed13g1106 | Sed-Chr13:10076534 | 9.00E-250 | dispersed | |
| Sed10g1468 | Sed-Chr10:31054188 | Sed13g1106 | Sed-Chr13:10076534 | 6.00E-178 | dispersed | |
| Sed13g1106 | Sed-Chr13:10076534 | Sed13g1107 | Sed-Chr13:10076534 | 0.00E+00 | tandem | |
| Sed13g1106 | Sed-Chr13:10076534 | Sed07g1838 | Sed-Chr7:22509888 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed13g1106 | K05016 | - | csv:101209987 | 1290.4 |