Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed13g1107 | ATGCTCAAGGAAAAGTACTATCAGGCCTTTGCAGTGTATGTTGGTTCCAATATTGTTTTAGCTTTTGCTGCTGCAGTGCTCTGTGCCTATATTGCTCCTGCTGCTGCAGGTTCTGGCATACCTGAGGTGAAAGCATATCTCAATGGTATAGATGCTTATTCTATATTGGCTCCAAGTACCTTATTTGTGAAGATTTTTGGTTCTATATTTGCCGTTGCCGGCGGATTCGTTGTGGGTAAGGAGGGACCCATGGTTCACACTGGTGCATGCATTGCCTCATTACTAGGACAAGGAGGCTCTCGCAAATATCGCTTGACCTGGAAGTGGCTGAGATACTTCAAAAATGATAGGGACAGGCGAGATTTGATCACTTGTGGTGCAGGAGCTGGTGTCGCAGCTGCCTTTCGAGCTCCTGTTGGTGGTGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTCTGGAGGACCTTTTTCACTACTGCTGTAGTGGCTGTTGTCTTGAGGAGTTTCATGGAATTTTGCCGAGGAGGAAAATGCGGGTTATTTGGTGAAGGAGGTCTCATCATGTTTGACATCGATACAGAAAACTCTACTTATGGCACTCCAGACCTTATTGCAATTGTTTTACTTGGAGTTATTGGTGGTGTGTTTGGAAGCCTTTACAACTACCTCGTGGATAAGGTCCTCCGAACCTACAGTATCATAAATGAGAGAGGTCCCGGATCGAAAGTCATCCTTGTTGTTGGCATTTCCTTATTAACAACATGTGTCTCATTTGGTCTTCCTTGGTTCTCACAATGTTTACCTTGCCCATCTGACTTGGCAGATGAATGTCCAACCATTGGTCGGTCAGGAAACTACAAGAACTTCCAATGCCCACCTGGGCACTATAATGATCTTGCTTCTTTATTTTTTAATACCAACGATGATGCCATCCGGAACCTGTTTACATCTGCTATTGACAAGCAGTTTCGGTTCTCCTCACTTTTTATCTTCTTTGTTGCTATCTATTTTCTTGGCATTATCACTTATGGCATTGCTGTGCCCTCGGGGCTCTTCATTCCTGTAATACTGGCCGGAGCCTCTTATGGTCGCATTGTAGGGAGATTATTTGGTTCAGTTGCCAACCTTGATGTCAGCCTCTATGCCCTTCTCGGAGCAGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTATGTGTCATACTCCTTGAGCTGACTAATAATCTTTTGATGCTCCCATTACTAATGTTGGTTCTTCTAATTTCGAAGTCGGTGGCAGATATTTTTAACAAAGGTGTCTATGATCAGATCGTGAAGATGAAGGGACTACCTTTTATGGAAGCCCATGCCGAACCATTTATGAGGCAGTTGGTTGCTGGTGGCGTGGCTTCTGGTCCCTTAGTTACATTCTCTGGGATCGAAAAGGTCGACAACATTATTCACGCTTTGAAAATGACAAACCACAATGGGTTTCCTGTAATTGACGAACCGCCTTTCTCAGATAGTTCAGAGCTTTGTGGGCTTGTTCTAAGGTCCCATTTGCTTGTTTTGCTTAAAGAGAAAAAATTTACAAAGAAAAAGTCGTCAATTAGAACAGATATTTTGAGGAGCTTCAAAGCACATGATTTTGCAAAACCTGGTTCTGGCAAAGGGGTGAAACTGGAAGATTTGGACATTAACGAGGAGGAGATGGAAATGTTTGTCGATCTTCATCCCATTACAAATACATCGCCCTACACAGTGGTAGAAACAATGTCGCTAGCTAAAGCGTCAATTCTCTTTCATGCGCTTGGTTTGAGGCACTTATTGGTGGTTCCGAAGACACCCGGGAGGCCTCCTATTGCTGGAATTCTGACCAGACATGACTTCATGCCTGAGCATATTCAGGGGCTTTACCCGCATCTCAAACTCCATTAG | 1941 | 44.2 | MLKEKYYQAFAVYVGSNIVLAFAAAVLCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAGAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSFMEFCRGGKCGLFGEGGLIMFDIDTENSTYGTPDLIAIVLLGVIGGVFGSLYNYLVDKVLRTYSIINERGPGSKVILVVGISLLTTCVSFGLPWFSQCLPCPSDLADECPTIGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRNLFTSAIDKQFRFSSLFIFFVAIYFLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVANLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLVTFSGIEKVDNIIHALKMTNHNGFPVIDEPPFSDSSELCGLVLRSHLLVLLKEKKFTKKKSSIRTDILRSFKAHDFAKPGSGKGVKLEDLDINEEEMEMFVDLHPITNTSPYTVVETMSLAKASILFHALGLRHLLVVPKTPGRPPIAGILTRHDFMPEHIQGLYPHLKLH | 646 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 10076534 | 10096737 | - | Sed0006545.2 | Sed13g1107 | 734617 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed13g1107 | 646 | PRINTS | Chloride channel signature | 385 | 401 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed13g1107 | 646 | PRINTS | Chloride channel signature | 441 | 455 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed13g1107 | 646 | PRINTS | Chloride channel signature | 128 | 147 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed13g1107 | 646 | PRINTS | Chloride channel signature | 353 | 373 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed13g1107 | 646 | PRINTS | Chloride channel signature | 403 | 422 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed13g1107 | 646 | PRINTS | Chloride channel signature | 33 | 50 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed13g1107 | 646 | PRINTS | Chloride channel signature | 64 | 83 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed13g1107 | 646 | SUPERFAMILY | CBS-domain pair | 458 | 632 | IPR046342 | - | |
| Sed13g1107 | 646 | PRINTS | Plant CLC chloride channel signature | 163 | 173 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed13g1107 | 646 | PRINTS | Plant CLC chloride channel signature | 149 | 157 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed13g1107 | 646 | PRINTS | Plant CLC chloride channel signature | 305 | 321 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed13g1107 | 646 | PRINTS | Plant CLC chloride channel signature | 181 | 188 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed13g1107 | 646 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 457 | 634 | - | - | |
| Sed13g1107 | 646 | FunFam | Chloride channel ClC3 | 1 | 272 | - | - | |
| Sed13g1107 | 646 | Gene3D | - | 479 | 619 | IPR046342 | - | |
| Sed13g1107 | 646 | ProSiteProfiles | CBS domain profile. | 581 | 645 | IPR000644 | - | |
| Sed13g1107 | 646 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 1 | 635 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Sed13g1107 | 646 | Pfam | Voltage gated chloride channel | 21 | 434 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed13g1107 | 646 | Gene3D | Clc chloride channel | 2 | 455 | - | - | |
| Sed13g1107 | 646 | SUPERFAMILY | Clc chloride channel | 8 | 456 | IPR014743 | - | |
| Sed13g1107 | 646 | Pfam | CBS domain | 582 | 632 | IPR000644 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed07g1838 | Sed-Chr7:22509888 | Sed13g1107 | Sed-Chr13:10076534 | 6.8e-313 | dispersed | |
| Sed13g1106 | Sed-Chr13:10076534 | Sed13g1107 | Sed-Chr13:10076534 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed13g1107 | K05016 | - | csv:101209987 | 1112.44 |