Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1117 ATGGCTCTGGTTTTGCATTCGTGGAAGGGTAACAAAAATGCCTTCAAAGCTCTTATAGCTGCAGAATACAATGGTGTCAAGATTGAGGAATCCCAAGATTTTTCCATGGGCGTAACCAACAAGTCTCCTGAGTTTCTCAAAATGAACCCTATTGGGAAGGTTCCTCTGTTAGTAACACCTGATGGTGGTGTCTTTGAGAGCAATGCTATTGCTCGTTATGTTGCTCGCTTGAAGGATGGAAGTTTATTTGGCTCTTCTTCAATTGAATATGGTCATGTTGAACAATGGATTGATTATTCCACGATGGAAATTGATGCTCATCTTTCAACTATTGCGAGACCTAGATTTGGATATGGTGTTTACAATGCTGAAGTAGAAGAAGCTGCAAACGTTGCTGTAAAACGAGCCTTGGCTGCTTTGAACAATTACCTTGCCTCAAACACATACCTTGTTGGACACTCCGTGACACTGGCTGATATCATTATGACATGCAATCTGTATTGGGGATTCACTTTCTTGTTGCCCAAAAGTGTTACTTCTGAGTTTCCCCACGTTGAGAGGCACTTCTGGACAATGGTCAATCAACCAAATTTCAAGAAGGTACTCGGAGAGGTGAAGCAGACCGAAGCTCTTCCACCAGTGAAAACACCTGAAGAGGTTGCAGCTGCAGCTGCCAAACCAAAGCCTGAGCCCAAGAAACAAGAAGAGAAGCCCAAAGCAGCACCTGCTGAAGAAGAGGAGGCACCGAAGCCCAAGGCCAAAAATCCTCTTGACCTGCTTCCTCCCAGCACCATGGTTTTGGATGAGTGGAAACGTCTCTACTCGAACACAAAAACTAACTTCCGTGAGGTTGCCATCAAAGGATTTTGGGACATGTATGACCCTGAAGGGTACTCCCTGTGGTTCTGTGATTACAAGTACAACGATGAGAACACTGTTTCCTTCGTGACTTTGAACAAGGTTGGTGGATTTCTCCAAAGAATGGATCTTGCTCGCAAGTATGCCTTTGGAAAGATGCTCGTGATTGGATCAGAGGCACCATTCAAGGTGAAGGGACTATGGCTTTTCCGTGGAAAAGAAATCCCAAAATTTGTTATGGACGAGTGCTACGATATGGAACTTTATGAGTGGACGAAGGTCGATATCTCGGATGAAGCCCAGAAGGAGAGAGTAAGCCAAATGATCGAAGACCAGGAACCATTTGAAGGAGAAGCTCTTTTGGATGCTAAATGCTTCAAGTGA 1242 44.44 MALVLHSWKGNKNAFKALIAAEYNGVKIEESQDFSMGVTNKSPEFLKMNPIGKVPLLVTPDGGVFESNAIARYVARLKDGSLFGSSSIEYGHVEQWIDYSTMEIDAHLSTIARPRFGYGVYNAEVEEAANVAVKRALAALNNYLASNTYLVGHSVTLADIIMTCNLYWGFTFLLPKSVTSEFPHVERHFWTMVNQPNFKKVLGEVKQTEALPPVKTPEEVAAAAAKPKPEPKKQEEKPKAAPAEEEEAPKPKAKNPLDLLPPSTMVLDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGKEIPKFVMDECYDMELYEWTKVDISDEAQKERVSQMIEDQEPFEGEALLDAKCFK 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10216242 10219553 + Sed0004034.1 Sed13g1117 734627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1117 413 SFLD Glutathione Transferase (cytosolic) 4 189 IPR040079 -
Sed13g1117 413 Gene3D Glutaredoxin 1 74 - -
Sed13g1117 413 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 253 413 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed13g1117 413 Pfam Elongation factor 1 gamma, conserved domain 252 360 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed13g1117 413 MobiDBLite consensus disorder prediction 212 260 - -
Sed13g1117 413 FunFam Elongation factor 1 gamma 79 215 - -
Sed13g1117 413 CDD GST_N_EF1Bgamma 3 77 - -
Sed13g1117 413 FunFam Elongation factor 1-gamma 1 253 413 - -
Sed13g1117 413 SUPERFAMILY Thioredoxin-like 2 79 IPR036249 -
Sed13g1117 413 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 214 IPR010987 -
Sed13g1117 413 FunFam Elongation factor 1B gamma 1 74 - -
Sed13g1117 413 Pfam Glutathione S-transferase, N-terminal domain 3 76 IPR004045 -
Sed13g1117 413 Gene3D - 80 212 - -
Sed13g1117 413 SMART EF1G_2 252 360 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed13g1117 413 SUPERFAMILY GST C-terminal domain-like 73 212 IPR036282 -
Sed13g1117 413 MobiDBLite consensus disorder prediction 225 253 - -
Sed13g1117 413 SUPERFAMILY eEF1-gamma domain 254 413 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed13g1117 413 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 413 IPR044628 GO:0004364(InterPro)
Sed13g1117 413 SFLD Main (cytGST) 4 189 - -
Sed13g1117 413 Pfam Glutathione S-transferase, C-terminal domain 115 196 IPR004046 -
Sed13g1117 413 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 253 413 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed13g1117 413 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Sed13g1117 413 CDD GST_C_EF1Bgamma_like 89 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1833 Sed-Chr7:22281748 Sed13g1117 Sed-Chr13:10216242 1.70E-191 dispersed
Sed07g1834 Sed-Chr7:22281748 Sed13g1117 Sed-Chr13:10216242 1.70E-191 dispersed
Sed11g1741 Sed-Chr11:32519487 Sed13g1117 Sed-Chr13:10216242 6.50E-170 dispersed
Sed11g1742 Sed-Chr11:32519487 Sed13g1117 Sed-Chr13:10216242 6.50E-170 dispersed
Sed13g1117 Sed-Chr13:10216242 Sed07g1832 Sed-Chr7:22273039 4.80E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1117 K03233 - csv:101207459 646.736