Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1133 ATGTTTTTCCTTGTTTTTACATTCTTCTCTCTTCTAGGCTCCTCTTCTTCTTCCCACAATTTGGTCAGTGATTTCCATGTTTTGCTTGCTCTCAAACAAGGGTTCGAATTCTCTGACTCTGCTGCACTAAGCACTTGGACTGCCTCAAACTTCAGCTCGGTTTGTTCGTGGGTCGGGATTCGGTGCTCTGATCGACGAGTTGTGTCGATTGACTTGACCGATTTGAGCCTTGGTGGCTCTGTTTCACCATTGATTTCTAGTCTTGACCAACTTTCTCAGTTGTCTGTGGCAGGAAATAACTTCTCTGGTGGCATTGAAGTAGTGAATTTGAGTTACTTGCGATTCCTTAACATCTCAAACAACCAGTTCACTGGGGCTTTGGACTGGAACTTTTCGAGTCTTCCGAACTTGGAAGTGTTTGATGCCTATAACAACAACTTCACTTCTCTGCTCCCCACTGAGATTTTGAAGTTACAGAACCTCAAATACTTGGACCTCGCAGGGAACTTTTTCCATGGAGCAATCCCTCAAAGCTATGGAAGTTTAGAAGGATTGCAATATCTTTCTCTTGCAGGAAATGATTTGGTTGGGAAAATCCCAAATGAGTTGGGAAATCTTACAAATTTGAGAGAAATTTACTTGAGCCATTACAATGACTTCGAAGGTGGAATTCCGCCCGAGCTCGGGAAGCTGGAAAGTTTGGTTATTATGGAGATTGCAGACTGCAATTTGGACGGTCAAATTCCTCTTGAGTTGGGAAATTTAAAGGCCTTAAACACTCTATATTTGCATACGAATCAACTATCAGGTTCAATCCCACAGGAGTTGGGTAATTTGACAAACTTGGTCTTTCTCGATCTCTCCAACAATGCACTCACCGGAGATATCCCATCTGAGTTTGTTGATCTCAAACAGCTCAAGCAATTCAACCTCTTCATGAACAAACTCTACGGATCTATTCCAGACTACGTAGCAGATTTTCCAAACTTGGAGAGCTTGGCACTATGGATGAACAATTTCACTGGCACAATCCCAAGGAATCTTGGCGAAAATGGGAGGCTTCAGCTCCTCGATTTGTCAACGAACAAGCTCACGGGTACAATCCCTCAGGGTTTGTGCTCATCAAACCAGTTGAAAACACTGATTCTGATGAATAACTTCCTGTTTGGGCCAGTCCCTGATGGGTTGGGAACTTGTATCAGTCTTACAAAAGTGAGGTTGGGGCAGAACTATCTGAATGGAAGCATTCCCAATGGCTTCATTTACTTGCCTCAGCTAAATCTTGCAGAGTTTCAGAACAATTACCTTTCAGGTACACTTTCAGAGAATTGGGAAAGTTCATCAAAACCCATCAAATTAGGACAGCTTAATCTCTCTAATAATCTCCTCTCTGGAACATTACCGTTTTCACTTTCAAATTTCTCTTCCCTGCAAATTCTCCTCCTCAATGGCAACCAGTTTTCTGGGACAATCCCTCCTTCCATTGGAGAACTTGGTGAACTTCTAAAGCTGGACGTTAGCAGAAACTCACTTTCGGGTCAAGTTCCACCTGAAATTGGGAATTGTATTCATCTCACATACCTTGATTTGAGCAACAACAATCTCTCGGGTCCAGTTCCACCTGAAATTTCCAATGCACATATTCTCAATTACCTCAACCTGTCAAGAAATCACCTAAATCAATCGCTGCCGAAATCCATCGGGGGCATGAAGAGCCTCACGATAGCCGATTTCTCGTTCAATGATTTCTCGGGAAAGCTACCGGAATCAGGACAGCTTGCCTTCTTCAATGCCTCATCCTTCGCCGGAAATCCTCAACTGTGCGGCTCTTTCCTCAACAATCCCTGCAATTTCTCAACAACAGCGACAAAAGCAGGGAAAACTCCAGCATATTTGAAGCTGATTTTCGCCCTAGGGCTGCTGATGTGCTCTCTAGTGTTCGTTACAGGCGCAGTAATGAAAGCAAGAACATTCAAAAGAAACGCAACAAGTTCATGGAAAATGACCTCGTTCCAAAAGCTGGATTTCAGCGTGTACGAGGTCCTGGAGTGCGTGAAGGACGTGAACGTGATCGGAAGAGGCGGCGCCGGGATCGTGTACCACGGGAAAATGCCGAACGGAGTGGAAATCGCGGTGAAGAAACTGCTAGGGTTTGGGGCGAACAGCCACGACCATGGATTCCGAGCAGAGATCCAAACCCTAGGCAACATTCGACACCGAAACATCGTGAGATTACTGGCGTTCTGCTCCAACAAAGAGACGAACCTGCTGGTGTACGAATACATGAGGAACGGAAGCTTGGGGGAAGCACTCCACGGGAAAAAGGCGTCGTTCCTGGGATGGAACCTGAGGTACAAAATCGCCATTGAAGCTGCTAAAGGTCTGTGCTACCTCCACCATGATTGTTCGCCGCTCATCGTCCATCGAGATGTGAAATCCAACAATATTCTGCTGAATTCCAACTTTGAAGCTCACGTCGCTGATTTCGGACTCGCCAAGTTCATGTTCGACGGCGGCGCGTCGGAGTGCATGTCCGTCATCGCCGGGTCCTACGGCTACATCGCTCCCGAATATGCATACACATTAAGAGTTGATGAAAAAAGTGATGTGTATAGTTTTGGAGTTGTTCTGTTAGAACTTTTGACGGGGCGCCGTCCAGTTGGAGATTTTGGGGATGGAGTCGTTGACATTGCACAATGGTGCAAAAGAACTTTAACAAATGGAGAGAGCGAAAACGACATTATTTGCATAGTTGACAAAAGAGTAGGAATGGTGCCAAAAGAAGAAGCAAAACATGTATTTTTCATAGCAATGCTATGCGTGCAAGAGAACAGTGTGGAGAGACCAACAATGAGAGAAGTTGTTCAAATGTTAGCAGAGTTTCCTCACCAATCTCCCAACTATATTCAATCTTCATCTTCTTCTCCCTGCCAAATTTTGAAAAGGGGAAGAACAGATAGAGATGATTTGTCAAAGTCTAAACTAGATCTTTTGGTTTAA 3000 44.63 MFFLVFTFFSLLGSSSSSHNLVSDFHVLLALKQGFEFSDSAALSTWTASNFSSVCSWVGIRCSDRRVVSIDLTDLSLGGSVSPLISSLDQLSQLSVAGNNFSGGIEVVNLSYLRFLNISNNQFTGALDWNFSSLPNLEVFDAYNNNFTSLLPTEILKLQNLKYLDLAGNFFHGAIPQSYGSLEGLQYLSLAGNDLVGKIPNELGNLTNLREIYLSHYNDFEGGIPPELGKLESLVIMEIADCNLDGQIPLELGNLKALNTLYLHTNQLSGSIPQELGNLTNLVFLDLSNNALTGDIPSEFVDLKQLKQFNLFMNKLYGSIPDYVADFPNLESLALWMNNFTGTIPRNLGENGRLQLLDLSTNKLTGTIPQGLCSSNQLKTLILMNNFLFGPVPDGLGTCISLTKVRLGQNYLNGSIPNGFIYLPQLNLAEFQNNYLSGTLSENWESSSKPIKLGQLNLSNNLLSGTLPFSLSNFSSLQILLLNGNQFSGTIPPSIGELGELLKLDVSRNSLSGQVPPEIGNCIHLTYLDLSNNNLSGPVPPEISNAHILNYLNLSRNHLNQSLPKSIGGMKSLTIADFSFNDFSGKLPESGQLAFFNASSFAGNPQLCGSFLNNPCNFSTTATKAGKTPAYLKLIFALGLLMCSLVFVTGAVMKARTFKRNATSSWKMTSFQKLDFSVYEVLECVKDVNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGANSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKASFLGWNLRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFMFDGGASECMSVIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGRRPVGDFGDGVVDIAQWCKRTLTNGESENDIICIVDKRVGMVPKEEAKHVFFIAMLCVQENSVERPTMREVVQMLAEFPHQSPNYIQSSSSSPCQILKRGRTDRDDLSKSKLDLLV 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10680182 10686264 + Sed0027631.1 Sed13g1133 734643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1133 999 Gene3D Phosphorylase Kinase; domain 1 649 761 - -
Sed13g1133 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 131 218 - -
Sed13g1133 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 219 324 - -
Sed13g1133 999 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 960 IPR050647 -
Sed13g1133 999 SUPERFAMILY L domain-like 352 609 - -
Sed13g1133 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1133 999 Gene3D Ribonuclease Inhibitor 129 220 IPR032675 -
Sed13g1133 999 Gene3D Ribonuclease Inhibitor 221 324 IPR032675 -
Sed13g1133 999 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Sed13g1133 999 SUPERFAMILY Protein kinase-like (PK-like) 672 958 IPR011009 -
Sed13g1133 999 Pfam Protein tyrosine and serine/threonine kinase 689 958 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1133 999 SUPERFAMILY RNI-like 69 389 - -
Sed13g1133 999 Gene3D Ribonuclease Inhibitor 23 128 IPR032675 -
Sed13g1133 999 MobiDBLite consensus disorder prediction 966 980 - -
Sed13g1133 999 MobiDBLite consensus disorder prediction 966 985 - -
Sed13g1133 999 SMART LRR_typ_2 134 157 IPR003591 -
Sed13g1133 999 SMART LRR_typ_2 158 181 IPR003591 -
Sed13g1133 999 SMART LRR_typ_2 182 206 IPR003591 -
Sed13g1133 999 SMART LRR_typ_2 523 546 IPR003591 -
Sed13g1133 999 SMART LRR_typ_2 255 278 IPR003591 -
Sed13g1133 999 SMART LRR_typ_2 279 303 IPR003591 -
Sed13g1133 999 SMART LRR_typ_2 498 522 IPR003591 -
Sed13g1133 999 SMART LRR_typ_2 352 375 IPR003591 -
Sed13g1133 999 SMART LRR_typ_2 327 351 IPR003591 -
Sed13g1133 999 Gene3D Ribonuclease Inhibitor 325 619 IPR032675 -
Sed13g1133 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 331 620 - -
Sed13g1133 999 Pfam Leucine Rich Repeat 353 374 IPR001611 GO:0005515(InterPro)
Sed13g1133 999 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515(InterPro)
Sed13g1133 999 Pfam Leucine Rich Repeat 549 570 IPR001611 GO:0005515(InterPro)
Sed13g1133 999 Pfam Leucine Rich Repeat 113 134 IPR001611 GO:0005515(InterPro)
Sed13g1133 999 Pfam Leucine Rich Repeat 453 474 IPR001611 GO:0005515(InterPro)
Sed13g1133 999 Pfam Leucine Rich Repeat 501 522 IPR001611 GO:0005515(InterPro)
Sed13g1133 999 Pfam Leucine Rich Repeat 476 498 IPR001611 GO:0005515(InterPro)
Sed13g1133 999 Pfam Leucine Rich Repeat 160 182 IPR001611 GO:0005515(InterPro)
Sed13g1133 999 Pfam Leucine Rich Repeat 281 302 IPR001611 GO:0005515(InterPro)
Sed13g1133 999 Pfam Leucine Rich Repeat 258 279 IPR001611 GO:0005515(InterPro)
Sed13g1133 999 Pfam Leucine Rich Repeat 185 206 IPR001611 GO:0005515(InterPro)
Sed13g1133 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 654 761 - -
Sed13g1133 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 762 975 - -
Sed13g1133 999 ProSiteProfiles Protein kinase domain profile. 685 961 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1133 999 SMART serkin_6 685 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1133 999 Gene3D Transferase(Phosphotransferase) domain 1 762 979 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1853 Sed-Chr7:25118503 Sed13g1133 Sed-Chr13:10680182 9.60E-238 dispersed
Sed07g1854 Sed-Chr7:25118503 Sed13g1133 Sed-Chr13:10680182 7.10E-241 dispersed
Sed13g1133 Sed-Chr13:10680182 Sed14g0971 Sed-Chr14:18940819 3.90E-141 dispersed
Sed13g1133 Sed-Chr13:10680182 Sed10g0775 Sed-Chr10:5481805 4.10E-138 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80095 PF07714 PK_Tyr_Ser-Thr 1.70E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1133 - - - 0.0