Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1153 ATGGCGGAGGAGTTTCAAAGCACCGGAAACTGGTGGGACGCTTCTAGAAGCCGCTATGAAGCCCCTTCGTCCTCCTCCATCACCACCTTTGTCGACCACTCCGACTCTGCCGTTGCAGCCAGTGACCCCAATTTGCATATCATGGGCTTGGGCCTCGATTGGAGCCAGCCCCCCAACTTCCGGGGCGGGGCCGAGAAGGCACCCGAGAGCAGTTTCCGATCGATGCTGCAGCCTGATAATATGAATTTGAATATGCAAGAAACAGGACAGCACCAACATATTCAATGGATGAGATCGGAGAAGCAATATTTGGGGGAGACTCCGGCGGCTGCGACTGAGTTCAAGCCAATAAACAGAGGGTTTTCGTTGGATCAGCCTCAGCCGCAGTTCAGCCCCTCTCAGTACAGCGCCGTCACCAGTTTTTCCATAGACAACGCCGGCTCCGCTACTTTGTACGGTAATTCCGCAACATTATTACAAGGCTTAATAGGCGGCGAGCAGCAAGGTTCGGGGGTGGGTATGAACTTCCCCTACAGCGGTCACTACGGATTGAACTCCGGCGAGTTAATGGCGGCGCCGTCCTGGTCGACCTCTAAAGTACCACAGTTCTTAAGAAACTCGCCGCCGAAAGGTGCAGCGCCGGCGCCATCGCATAGTCACTTACAATTTTCTAACAATACGCCGTTCTGGAACGCGTCGGATGTAAAAGACGTGAGGCCCAGTTATTTTCCGCCGCTGTATAACGCCGCACCTTTCGCCGATAAATCAAAGCAGAATATATCAGAAGTTGGTGATTCGGGAACAGTGGGTAAAAAAAGTGGAAATGATCATAATCAACAAACGGGTGCTATTGCTCCTGCTAAAAGGCCTCGAAATGAAATCCCTTCGCCATTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGAGACAGAATCACTGCGCTCCAACAACTCGTTTCACCTTTCGGAAAGACCGATACAGCTTCAGTGCTGTCCGAAGCCATTGAATACATAAAGTTTCTCCATGAACAAGTCAGTGTTTTGAGCACTCCATATTTGAAGAGTGGAGCTGTAGTACAGCAACAACATCAGCAGCAGAGCTGTGAGAAAACAAAGGATGGAGAAGGTGGTAAACAAGATCTAAGAAGCAGAGGGCTTTGTTTAGTTCCAGTTTCAAGTACATTTCCAGTCACTCACGAAACCACAGTTGATTTTTGGACTCCAACCTTCGGAGGAACATTCAGATAA 1248 49.76 MAEEFQSTGNWWDASRSRYEAPSSSSITTFVDHSDSAVAASDPNLHIMGLGLDWSQPPNFRGGAEKAPESSFRSMLQPDNMNLNMQETGQHQHIQWMRSEKQYLGETPAAATEFKPINRGFSLDQPQPQFSPSQYSAVTSFSIDNAGSATLYGNSATLLQGLIGGEQQGSGVGMNFPYSGHYGLNSGELMAAPSWSTSKVPQFLRNSPPKGAAPAPSHSHLQFSNNTPFWNASDVKDVRPSYFPPLYNAAPFADKSKQNISEVGDSGTVGKKSGNDHNQQTGAIAPAKRPRNEIPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYLKSGAVVQQQHQQQSCEKTKDGEGGKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13532768 13537081 + Sed0007311.1 Sed13g1153 734663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1153 415 FunFam Transcription factor bHLH123 family 302 366 - -
Sed13g1153 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 302 356 IPR036638 GO:0046983(InterPro)
Sed13g1153 415 SMART finulus 303 347 IPR011598 GO:0046983(InterPro)
Sed13g1153 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 341 IPR011598 GO:0046983(InterPro)
Sed13g1153 415 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 113 394 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed13g1153 415 MobiDBLite consensus disorder prediction 261 282 - -
Sed13g1153 415 CDD bHLH_AtbHLH_like 298 349 IPR045239 -
Sed13g1153 415 Gene3D - 302 370 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0574 Sed-Chr12:3476681 Sed13g1153 Sed-Chr13:13532768 3.00E-27 dispersed
Sed12g0575 Sed-Chr12:3476681 Sed13g1153 Sed-Chr13:13532768 3.00E-26 dispersed
Sed13g1153 Sed-Chr13:13532768 Sed14g1385 Sed-Chr14:22611683 3.70E-53 dispersed
Sed13g1153 Sed-Chr13:13532768 Sed13g1154 Sed-Chr13:13532768 1.20E-197 tandem
Sed06g0292 Sed-Chr6:2510758 Sed13g1153 Sed-Chr13:13532768 1.50E-25 transposed
Sed10g1983 Sed-Chr10:36445352 Sed13g1153 Sed-Chr13:13532768 1.00E-26 transposed
Sed01g2039 Sed-Chr1:15260900 Sed13g1153 Sed-Chr13:13532768 3.80E-37 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1153 - - - 0.0