Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1154 ATGCTGCAGCCTGATAATATGAATTTGAATATGCAAGAAACAGGACAGCACCAACATATTCAATGGATGAGATCGGAGAAGCAATATTTGGGGGAGACTCCGGCGGCTGCGACTGAGTTCAAGCCAATAAACAGAGGGTTTTCGTTGGATCAGCCTCAGCCGCAGTTCAGCCCCTCTCAGTACAGCGCCGTCACCAGTTTTTCCATAGACAACGCCGGCTCCGCTACTTTGTACGGTAATTCCGCAACATTATTACAAGGCTTAATAGGCGGCGAGCAGCAAGGTTCGGGGGTGGGTATGAACTTCCCCTACAGCGGTCACTACGGATTGAACTCCGGCGAGTTAATGGCGGCGCCGTCCTGGTCGACCTCTAAAGTACCACAGTTCTTAAGAAACTCGCCGCCGAAAGGTGCAGCGCCGGCGCCATCGCATAGTCACTTACAATTTTCTAACAATACGCCGTTCTGGAACGCGTCGGATGTAAAAGACGTGAGGCCCAGTTATTTTCCGCCGCTGTATAACGCCGCACCTTTCGCCGATAAATCAAAGCAGAATATATCAGAAGTTGGTGATTCGGGAACAGTGGGTAAAAAAAGTGGAAATGATCATAATCAACAAACGGGTGCTATTGCTCCTGCTAAAAGGCCTCGAAATGAAATCCCTTCGCCATTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGAGACAGAATCACTGCGCTCCAACAACTCGTTTCACCTTTCGGAAAGACCGATACAGCTTCAGTGCTGTCCGAAGCCATTGAATACATAAAGTTTCTCCATGAACAAGTCAGTGTTTTGAGCACTCCATATTTGAAGAGTGGAGCTGTAGTACAGCAACAACATCAGCAGCAGAGCTGTGAGAAAACAAAGGATGGAGAAGGTGGTAAACAAGATCTAAGAAGCAGAGGGCTTTGTTTAGTTCCAGTTTCAAGTACATTTCCAGTCACTCACGAAACCACAGTTGATTTTTGGACTCCAACCTTCGGAGGAACATTCAGATAA 1026 47.47 MLQPDNMNLNMQETGQHQHIQWMRSEKQYLGETPAAATEFKPINRGFSLDQPQPQFSPSQYSAVTSFSIDNAGSATLYGNSATLLQGLIGGEQQGSGVGMNFPYSGHYGLNSGELMAAPSWSTSKVPQFLRNSPPKGAAPAPSHSHLQFSNNTPFWNASDVKDVRPSYFPPLYNAAPFADKSKQNISEVGDSGTVGKKSGNDHNQQTGAIAPAKRPRNEIPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYLKSGAVVQQQHQQQSCEKTKDGEGGKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13532768 13537081 + Sed0007311.2 Sed13g1154 734664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1154 341 FunFam Transcription factor bHLH123 family 228 292 - -
Sed13g1154 341 SMART finulus 229 273 IPR011598 GO:0046983(InterPro)
Sed13g1154 341 Gene3D - 228 297 IPR036638 GO:0046983(InterPro)
Sed13g1154 341 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 68 320 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed13g1154 341 CDD bHLH_AtbHLH_like 224 275 IPR045239 -
Sed13g1154 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 282 IPR036638 GO:0046983(InterPro)
Sed13g1154 341 MobiDBLite consensus disorder prediction 187 208 - -
Sed13g1154 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 218 267 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0292 Sed-Chr6:2510758 Sed13g1154 Sed-Chr13:13532768 1.50E-25 dispersed
Sed10g1983 Sed-Chr10:36445352 Sed13g1154 Sed-Chr13:13532768 1.00E-26 dispersed
Sed13g1154 Sed-Chr13:13532768 Sed14g1385 Sed-Chr14:22611683 8.90E-53 dispersed
Sed13g1153 Sed-Chr13:13532768 Sed13g1154 Sed-Chr13:13532768 1.20E-197 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1154 - - - 0.0