Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1157 ATGGCAACAGTTTGGTTGTCGTTGAAGAAATCCTTGCAGTGCAAATCAGAGGCATCGGAAGTTGATGAGCCAAAAAGCAGAAAACATTTAGGAGCAATTTTGACAAGAAAAGCAGGAGGGGGAAGATCAGGGTGTTCAAGGTCCATAGCTAACCTGAAAGATGTGATCCATGGGGGCAGCAGGAGGCATTTGGAGAAGCCCCCTAGCTGCAGCCCGAGATCCATTGGCAGCACTGAGTTTGTAAACCCAATAGCCCACCAAGTCATTCTCAGCAACTCAAGCTGCCACCTCAGAATCACCAATGTGCCTTCCGCCGCCCACGGCTCCTCCTCCTTTGTCGGCACTCTCACACCGGGCACCCCCGGTCCCGGTGCCCTCCCCGCAATGCATTCCTTCCCTTTTAGAGATGGATTTGGCAGTGGCGGTGGCGGCGGTCGTGGTGGGAATGAGTCTTCTTGTGGGGTTACCTGTCATAAATGTGGAGAGCAGTTCAACAAATGGGATGCTGCTGAAGCACATCATCTTTCTAAACATGCTGTGACTGAGCTTGTGGAAGGAGATTCATCAAGGAAAATAGTAGAGATCATATGCAGGACAAGCTGGTTGAAGTCTGAGAATCAATCTGGTCGAATAGAAAGAGTCCTCAAGGTTCACAATATGCAACGAACGCTAGCCCGATTCGAGGAGTATCGAGAGATTGTAAAGACAAAAGCCAGCAAGCTCACAAAGAAGCACCCTCGATGCATTGCCGACGGGAATGAGCTCCTGCGATTCTATGGCACGACAGTTGCGTGCTCGCTCGGCCTGAATGGATCCTCCGGCCTCTGCATCTCAGAGAAATGCCACGTCTGCAGGATCATTCAGAATGATTTCTCGGCAAACACAGATATGAAAGAGGGGATAGGCGTATTCACAACTTCGACGAGTGCGATAGCGTTCAACTTGATCGAGTTGTCGGGAGGGGTAGATGTGAGGAAGGCGATGATAGTTTGCAGGGTGATTGCGGGGAGGGTTCACAGGCCAATGGAGAATATACAAGAAATGGCTGGGCAGACAGGGTTTGATTCATTGGCAGGGAAAGTTGGGTTGCATTCAAATATAGAAGAGCTTTATTTGCTGAATCCTAGAGCTTTGCTTCCATGTTTTGTGGTAATTTGCAAACTATGA 1167 49.44 MATVWLSLKKSLQCKSEASEVDEPKSRKHLGAILTRKAGGGRSGCSRSIANLKDVIHGGSRRHLEKPPSCSPRSIGSTEFVNPIAHQVILSNSSCHLRITNVPSAAHGSSSFVGTLTPGTPGPGALPAMHSFPFRDGFGSGGGGGRGGNESSCGVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQSGRIERVLKVHNMQRTLARFEEYREIVKTKASKLTKKHPRCIADGNELLRFYGTTVACSLGLNGSSGLCISEKCHVCRIIQNDFSANTDMKEGIGVFTTSTSAIAFNLIELSGGVDVRKAMIVCRVIAGRVHRPMENIQEMAGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKL 388
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 14248788 14250602 - Sed0007436.1 Sed13g1157 734667
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1157 388 Gene3D - 180 387 - -
Sed13g1157 388 ProSitePatterns Zinc finger C2H2 type domain signature. 157 178 IPR013087 -
Sed13g1157 388 FunFam C2H2-like zinc finger protein 179 387 - -
Sed13g1157 388 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 387 - -
Sed13g1157 388 SUPERFAMILY ADP-ribosylation 180 387 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1906 Sed-Chr7:32919466 Sed13g1157 Sed-Chr13:14248788 2.00E-171 dispersed
Sed10g0353 Sed-Chr10:2162110 Sed13g1157 Sed-Chr13:14248788 4.20E-61 dispersed
Sed13g1157 Sed-Chr13:14248788 Sed13g1577 Sed-Chr13:20939216 7.00E-54 dispersed
Sed13g1157 Sed-Chr13:14248788 Sed03g0822 Sed-Chr3:4918291 2.50E-59 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40422 None None None None Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1157 - - - 0.0