Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1162 ATGGCCGCCACCGCCACCTCCACCACCCTTCTCCGGCCGACCCTGTTTCTCGGCCAAACCAGAGGCTCTTCCCAGAACTCCCTCCGAGATGTCGTCGCCATGGGAACCGGCAAATACACCATGGGAAATGATCTGTGGTATGGGCCAGATCGAGTTAAGTACTTGGGGCCATTTTCAGCTCAGACTCCCTCCTACTTGAACGGCGAGTTCCCCGGTGATTATGGATGGGACACTGCTGGCTTATCCGCCGACCCCGAGGCCTTTGCCAAGAACAGAGCACTTGAGGTGATCCACGGGAGATGGGCCATGTTGGGAGCCTTCGGGTGCATAACACCAGAAGTCCTACAGAAATGGTTGAAAGTGGAATTCAAGGAGCCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCTCAGAAGGAGGGCTGGACTACCTGGGGAACCCGAACCTGGTCCACGCCCAGAGCATCTTGGCCGTGTTGGGGTTCCAAGTGGTCCTAATGGGCCTGGTTGAAGGGTTCCGCATCAATGGGCTCGACGGCGTGGGCGAGGGCAACGACCTGTACCCGGGGGGTCAGTACTTCGACCCGCTTGGATTGGCCGACGACCCCATCACCTTTGCCGAGCTCAAGGTTAAGGAGATCAAGAACGGGCGGCTTGCCATGTTCTCCATGTTCGGGTTCTTCGTGCAGGCTATCGTCACTGGAAAAGGTCCGCTTGAGAACCTCCTTGACCATATTGATAACCCTGTGGCCAACAATGCTTGGGTTTATGCTACCAAGTTTGCCCCTGGCTCATAA 795 56.6 MAATATSTTLLRPTLFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWLKVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPITFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANNAWVYATKFAPGS 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14698087 14699635 - Sed0003939.1 Sed13g1162 734672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1162 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 27 263 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Sed13g1162 264 FunFam Chlorophyll a-b binding protein, chloroplastic 53 257 - -
Sed13g1162 264 Pfam Chlorophyll A-B binding protein 63 231 IPR022796 -
Sed13g1162 264 Gene3D Chlorophyll a/b binding protein domain 53 257 - -
Sed13g1162 264 SUPERFAMILY Chlorophyll a-b binding protein 45 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1879 Sed-Chr7:30535291 Sed13g1162 Sed-Chr13:14698087 1.70E-62 dispersed
Sed13g1162 Sed-Chr13:14698087 Sed14g1562 Sed-Chr14:23798355 9.50E-95 dispersed
Sed13g1162 Sed-Chr13:14698087 Sed05g2091 Sed-Chr5:34076276 8.90E-101 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1162 K08914 - csv:101207278 514.998