Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1171 ATGAATTGCTTTCAATGCTGCATGTCCGGTGAGAAAGACAACGGGGATTCCTTGAAAAAGAGCATCAAGAAGGAGCATCACCCTGACATCAAAACTTTTGCCTCTTTTGCCAACATTTCCTTTAAGTCTGATAGCAGCCGGCGAAGGTACATAGTTGAGGAGGTAAAGAAGTTAGGAAAAGGAAACAACGCTTCAGCTCAAGTTTTTACATTTAGTGAGCTAAGCAGTGCTACAAATAACTTCAACCAAGAAAACCTGTTGGGGGAAGGAGGTTTTGGAAGGGTTTACAAAGGCATCATTGAAAGCACAAAACAAGTTACAGCAGTGAAGCAACTTGACCGAAATGGATTTCAAGGAAACAGAGAGTTCCTCGTAGAGGTTTTGATGTTGAGTCTTCTTCACCATCCCAATCTTGTGAATTTGGTTGGCTATTGTGCTGATGGGGATCAAAGGATTTTGGTTTATGAGTGCATGGTTAACGGTTCCTTGGAGGGTCATCTTCTCGACATAGCCCCTGATAAGCAGCCTCTGGACTGGAAGACGAGGATGAAAATCGCAGAAGGAGCTGCAAAAGGACTCGAGTACTTACACGAAACAGCGAATCCTCCAGTAATATACCGCGATTTCAAAGCTTCAAACATACTACTGGATGAGGAATTCAATCCAAAGCTCTCTGATTTTGGTCTGGCGAAGTTAGGTCCTACTGGAGATAAAACTCATGTTTCCACTAGAGTAATGGGAACCTATGGTTATTGTGCTCCTGAATATGCTTTGACAGGACAATTGACCACCAAATCGGATGTCTACAGCTTTGGTGTTGTGTTTCTCGAGATATTAACCGGAAGAAGAGTTATAGACAATGCAAGACCAACAGCAGAACAAAATTTAATTACTTGGGCGCAACCACTTTTCAAAGACAGAAGGAAATTTACACTAATGGCAGATCCAAAGCTAGAAGGAAATTACCCTGTGAAGGCTCTCTATCAAGCTTTGGCAGTGGCAGCTATGTGTTTACAGGAGGAAGCGAGTACACGGCCATTGATCAGCGACGTGGTAACAGCTCTTGAATATTTAGCAGCAAACAAGGATATCGATGCAGACGGAGATGACGAAGAAGAAACGGGAACAGTATCGAGATCAGCTTCTCCTAATAGAAGTAGTAATAATGGAGAAAAAAATGTTGACGTTGAGGGTGATGGGAAGTGA 1206 42.7 MNCFQCCMSGEKDNGDSLKKSIKKEHHPDIKTFASFANISFKSDSSRRRYIVEEVKKLGKGNNASAQVFTFSELSSATNNFNQENLLGEGGFGRVYKGIIESTKQVTAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYECMVNGSLEGHLLDIAPDKQPLDWKTRMKIAEGAAKGLEYLHETANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEILTGRRVIDNARPTAEQNLITWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVAAMCLQEEASTRPLISDVVTALEYLAANKDIDADGDDEEETGTVSRSASPNRSSNNGEKNVDVEGDGK 401
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 15483185 15484839 - Sed0008925.1 Sed13g1171 734681
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1171 401 MobiDBLite consensus disorder prediction 363 401 - -
Sed13g1171 401 Pfam Protein kinase domain 82 352 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1171 401 Gene3D Transferase(Phosphotransferase) domain 1 158 381 - -
Sed13g1171 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1171 401 Gene3D Phosphorylase Kinase; domain 1 41 156 - -
Sed13g1171 401 SUPERFAMILY Protein kinase-like (PK-like) 67 362 IPR011009 -
Sed13g1171 401 CDD STKc_IRAK 87 356 - -
Sed13g1171 401 ProSiteProfiles Protein kinase domain profile. 81 358 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1171 401 FunFam probable serine/threonine-protein kinase RLCKVII 53 157 - -
Sed13g1171 401 PANTHER OS07G0668900 PROTEIN 45 381 - -
Sed13g1171 401 MobiDBLite consensus disorder prediction 377 391 - -
Sed13g1171 401 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524(InterPro)
Sed13g1171 401 FunFam Serine/threonine-protein kinase PBS1 158 373 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1920 Sed-Chr7:33349097 Sed13g1171 Sed-Chr13:15483185 1.20E-194 dispersed
Sed12g0854 Sed-Chr12:5311168 Sed13g1171 Sed-Chr13:15483185 6.00E-138 dispersed
Sed12g1762 Sed-Chr12:28729590 Sed13g1171 Sed-Chr13:15483185 1.60E-84 dispersed
Sed13g1171 Sed-Chr13:15483185 Sed06g1559 Sed-Chr6:40402233 5.50E-94 dispersed
Sed13g1171 Sed-Chr13:15483185 Sed07g2881 Sed-Chr7:43496072 2.30E-156 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80097 PF00069 Pkinase 2.40E-46 CL0016 Sed PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1171 - - - 0.0