Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g1171 | ATGAATTGCTTTCAATGCTGCATGTCCGGTGAGAAAGACAACGGGGATTCCTTGAAAAAGAGCATCAAGAAGGAGCATCACCCTGACATCAAAACTTTTGCCTCTTTTGCCAACATTTCCTTTAAGTCTGATAGCAGCCGGCGAAGGTACATAGTTGAGGAGGTAAAGAAGTTAGGAAAAGGAAACAACGCTTCAGCTCAAGTTTTTACATTTAGTGAGCTAAGCAGTGCTACAAATAACTTCAACCAAGAAAACCTGTTGGGGGAAGGAGGTTTTGGAAGGGTTTACAAAGGCATCATTGAAAGCACAAAACAAGTTACAGCAGTGAAGCAACTTGACCGAAATGGATTTCAAGGAAACAGAGAGTTCCTCGTAGAGGTTTTGATGTTGAGTCTTCTTCACCATCCCAATCTTGTGAATTTGGTTGGCTATTGTGCTGATGGGGATCAAAGGATTTTGGTTTATGAGTGCATGGTTAACGGTTCCTTGGAGGGTCATCTTCTCGACATAGCCCCTGATAAGCAGCCTCTGGACTGGAAGACGAGGATGAAAATCGCAGAAGGAGCTGCAAAAGGACTCGAGTACTTACACGAAACAGCGAATCCTCCAGTAATATACCGCGATTTCAAAGCTTCAAACATACTACTGGATGAGGAATTCAATCCAAAGCTCTCTGATTTTGGTCTGGCGAAGTTAGGTCCTACTGGAGATAAAACTCATGTTTCCACTAGAGTAATGGGAACCTATGGTTATTGTGCTCCTGAATATGCTTTGACAGGACAATTGACCACCAAATCGGATGTCTACAGCTTTGGTGTTGTGTTTCTCGAGATATTAACCGGAAGAAGAGTTATAGACAATGCAAGACCAACAGCAGAACAAAATTTAATTACTTGGGCGCAACCACTTTTCAAAGACAGAAGGAAATTTACACTAATGGCAGATCCAAAGCTAGAAGGAAATTACCCTGTGAAGGCTCTCTATCAAGCTTTGGCAGTGGCAGCTATGTGTTTACAGGAGGAAGCGAGTACACGGCCATTGATCAGCGACGTGGTAACAGCTCTTGAATATTTAGCAGCAAACAAGGATATCGATGCAGACGGAGATGACGAAGAAGAAACGGGAACAGTATCGAGATCAGCTTCTCCTAATAGAAGTAGTAATAATGGAGAAAAAAATGTTGACGTTGAGGGTGATGGGAAGTGA | 1206 | 42.7 | MNCFQCCMSGEKDNGDSLKKSIKKEHHPDIKTFASFANISFKSDSSRRRYIVEEVKKLGKGNNASAQVFTFSELSSATNNFNQENLLGEGGFGRVYKGIIESTKQVTAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYECMVNGSLEGHLLDIAPDKQPLDWKTRMKIAEGAAKGLEYLHETANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEILTGRRVIDNARPTAEQNLITWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVAAMCLQEEASTRPLISDVVTALEYLAANKDIDADGDDEEETGTVSRSASPNRSSNNGEKNVDVEGDGK | 401 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 15483185 | 15484839 | - | Sed0008925.1 | Sed13g1171 | 734681 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g1171 | 401 | MobiDBLite | consensus disorder prediction | 363 | 401 | - | - | |
Sed13g1171 | 401 | Pfam | Protein kinase domain | 82 | 352 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g1171 | 401 | Gene3D | Transferase(Phosphotransferase) domain 1 | 158 | 381 | - | - | |
Sed13g1171 | 401 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 204 | 216 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed13g1171 | 401 | Gene3D | Phosphorylase Kinase; domain 1 | 41 | 156 | - | - | |
Sed13g1171 | 401 | SUPERFAMILY | Protein kinase-like (PK-like) | 67 | 362 | IPR011009 | - | |
Sed13g1171 | 401 | CDD | STKc_IRAK | 87 | 356 | - | - | |
Sed13g1171 | 401 | ProSiteProfiles | Protein kinase domain profile. | 81 | 358 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g1171 | 401 | FunFam | probable serine/threonine-protein kinase RLCKVII | 53 | 157 | - | - | |
Sed13g1171 | 401 | PANTHER | OS07G0668900 PROTEIN | 45 | 381 | - | - | |
Sed13g1171 | 401 | MobiDBLite | consensus disorder prediction | 377 | 391 | - | - | |
Sed13g1171 | 401 | ProSitePatterns | Protein kinases ATP-binding region signature. | 87 | 110 | IPR017441 | GO:0005524(InterPro) | |
Sed13g1171 | 401 | FunFam | Serine/threonine-protein kinase PBS1 | 158 | 373 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g1920 | Sed-Chr7:33349097 | Sed13g1171 | Sed-Chr13:15483185 | 1.20E-194 | dispersed | |
Sed12g0854 | Sed-Chr12:5311168 | Sed13g1171 | Sed-Chr13:15483185 | 6.00E-138 | dispersed | |
Sed12g1762 | Sed-Chr12:28729590 | Sed13g1171 | Sed-Chr13:15483185 | 1.60E-84 | dispersed | |
Sed13g1171 | Sed-Chr13:15483185 | Sed06g1559 | Sed-Chr6:40402233 | 5.50E-94 | dispersed | |
Sed13g1171 | Sed-Chr13:15483185 | Sed07g2881 | Sed-Chr7:43496072 | 2.30E-156 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80097 | PF00069 | Pkinase | 2.40E-46 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g1171 | - | - | - | 0.0 |