Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1199 ATGTCAGGAGCTGAGACCGGAGTGATGACCGGCGGCGAACCCTTCAGCATCGGTCTCCAGAAGAGTCCAGTGCAGTCGCAGCAGCCGGGCTTGCAGGGTATGCATTTACCCTTTGGCGCGGACGGGGTCTACAAGCCCGTCGCCACCACCGCTGCTGCTGCTTCACCCATTTACCAATCCTCCGGCGGCGTTGGAGTGAACGGTAACGAAGCTTTCATTAACATGAATACGCAGAGTGAGGCAGTAAAGAGGAAGAGAGGGAGGCCTAGAAAGTATGGACCAGATGGCAGTATGGCTGTGGCTCCTGCAGTTTCCTCCTCGGCCGCCGCTGCAACTCAGTCCAGTGGAGGCTTTTCTCCTCCATCCGGAGGATTAGGCTCTCCTCCATCTACTATGAAGAGAGCTAGAGGCAGACCCCCTGGCTCTGGCAAAAAGCAGCAGCTTGATGCTTTGGGGTCAGCAGGAGTTGGATTTACCCCACATGTCATCACCGTGCAAACTGGAGAGGATGTAAATTCAAAAATAATGTCATTTTCACAGAATGGTCCTAGAGCTGTTTGCGTCCTTACTGCAAATGGATCGATATCCAATGTCACTCTACGTCAACCAGCGATGTCTGGTGGAACCATAACTTACAACGGTCGATTTGAGATTTTGTCACTATCTGGGTTATATCTCCTCTTTGAGAATGGCGGTCAGCGGAGCCGAACTGGTGGCTTAAGTGTTTCATTGTCCGGACCAGATGGTAGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCCTCTCCTGTTCAGGTGGTGGTGGGAAGCTTCGTCACTGATGGGGGACACATGGAATTGAAACAAGCAAACCATTTGGAACAGCCGACTGTTACTGCTCCACATAAACTTGCTCCTATCCGTGCTGGAATGACGGGGGCGAGTAGCCCGCAATCACGTGGGACATTCAGTGAATCTTCAGGAGGCCCAGGGAGTCCATTTAATCAGAGTGCTGGAGCCTGCAATAACAACATATCTTGGGACTAA 1032 52.23 MSGAETGVMTGGEPFSIGLQKSPVQSQQPGLQGMHLPFGADGVYKPVATTAAAASPIYQSSGGVGVNGNEAFINMNTQSEAVKRKRGRPRKYGPDGSMAVAPAVSSSAAAATQSSGGFSPPSGGLGSPPSTMKRARGRPPGSGKKQQLDALGSAGVGFTPHVITVQTGEDVNSKIMSFSQNGPRAVCVLTANGSISNVTLRQPAMSGGTITYNGRFEILSLSGLYLLFENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDGGHMELKQANHLEQPTVTAPHKLAPIRAGMTGASSPQSRGTFSESSGGPGSPFNQSAGACNNNISWD 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 17102459 17105183 + Sed0023859.1 Sed13g1199 734709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1199 343 MobiDBLite consensus disorder prediction 106 126 - -
Sed13g1199 343 MobiDBLite consensus disorder prediction 1 33 - -
Sed13g1199 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 328 IPR039605 GO:0003680(InterPro)
Sed13g1199 343 MobiDBLite consensus disorder prediction 78 148 - -
Sed13g1199 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 275 - -
Sed13g1199 343 CDD DUF296 159 273 IPR005175 -
Sed13g1199 343 ProSiteProfiles PPC domain profile profile. 154 294 IPR005175 -
Sed13g1199 343 Gene3D - 160 290 - -
Sed13g1199 343 MobiDBLite consensus disorder prediction 307 343 - -
Sed13g1199 343 FunFam AT-hook motif nuclear-localized protein 1-like 160 291 - -
Sed13g1199 343 MobiDBLite consensus disorder prediction 305 343 - -
Sed13g1199 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 274 IPR005175 -
Sed13g1199 343 SMART AT_hook_2 83 95 IPR017956 GO:0003677(InterPro)
Sed13g1199 343 SMART AT_hook_2 133 145 IPR017956 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2400 Sed-Chr1:18014971 Sed13g1199 Sed-Chr13:17102459 1.10E-108 dispersed
Sed08g1867 Sed-Chr8:33239738 Sed13g1199 Sed-Chr13:17102459 5.40E-88 dispersed
Sed08g1868 Sed-Chr8:33239738 Sed13g1199 Sed-Chr13:17102459 2.10E-89 dispersed
Sed11g0193 Sed-Chr11:1761133 Sed13g1199 Sed-Chr13:17102459 4.60E-36 dispersed
Sed13g0195 Sed-Chr13:1277102 Sed13g1199 Sed-Chr13:17102459 1.10E-42 dispersed
Sed13g1199 Sed-Chr13:17102459 Sed09g0064 Sed-Chr9:499521 2.90E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1199 - - - 0.0