Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1219 ATGAGCGGTAAGCGTATTAGCTTTGTGTGGGGTGGGCTTTGGGTTGCAACATACATAATGCAAGTAGGAGGTGTTGTTCTATTTGCTTCAAAACCAGTCCGCGTAAGGTTCCAGTGTAGCGGTAAACCGTCCGTCAGAGCAGGCTCAGGCAATCCAAGCTCGATGGCGGCCGCCGGTCCTAAGTGGGCTCAAAAGACTGTTACGCTGCCTCCGCATAGGCAGGGCTGTCATCTCATCACCCCCAAGATAATGAAGGAAATTGGGCAAGATTTGTCAGAATTCAAATGTGGCCTTGCTCATTTCTTCCTGCAGCATACGAGTGCCTCTCTCACCATCAATGAAAACTATGATTCCGATGTTCGTAGTGATACTGAAACCTTCCTCAACAAGATAGTGTCTGAAGGGACAACTGCTCCTTGGAACCATACACTTGAAGGCCCGGATGACATGCCAGCACACATTAAATCATCCATGTTTGGCTGTGCACTCACGATTCCAATTACAAATGGGAAGTTTAATGTGGGTACTTGGCAGTTGAATTATTGGCGTTTAGGCATTTTGGATTGA 567 47.27 MSGKRISFVWGGLWVATYIMQVGGVVLFASKPVRVRFQCSGKPSVRAGSGNPSSMAAAGPKWAQKTVTLPPHRQGCHLITPKIMKEIGQDLSEFKCGLAHFFLQHTSASLTINENYDSDVRSDTETFLNKIVSEGTTAPWNHTLEGPDDMPAHIKSSMFGCALTIPITNGKFNVGTWQLNYWRLGILD 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 17702808 17721492 + Sed0017561.1 Sed13g1219 734729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1219 188 SUPERFAMILY YjbQ-like 62 178 IPR035917 -
Sed13g1219 188 Gene3D - 54 182 IPR035917 -
Sed13g1219 188 Pfam Uncharacterised protein family UPF0047 79 178 IPR001602 -
Sed13g1219 188 PANTHER UNCHARACTERIZED PROTEIN YJBQ-RELATED 57 178 IPR001602 -
Sed13g1219 188 NCBIfam secondary thiamine-phosphate synthase enzyme YjbQ 66 179 IPR001602 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1219 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g12 . . . . . . . . . . . Cma09g00004 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0002 . . . . Blo17g00913 . . . . . . . Sed13g1219 . Cmo09g00005 . . . Car09g00004 . . Bhi09g02778 Tan01g5192 Cmetu07g1303 . Hepe01g2387 Mch11g0008 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013824 0 1 1 0 0 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 0 1 1 1 1 20