Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1363 ATGGGTAGAGGCGGGGAAAACAATGGGAAAAAGGAAATTTTTGCAGCTAATTCCTCGAGTAAAGAAGCGTACCCTGCCTGGGCAAGGGATGTTCAAGAATGCGTAGAGAAGTACCAAGTGGACCCAGATCTCGGATTATCTTCTGAAGATGTTGAGAAACAGAGGAAGATCTATGGATTCAATGAATTGGAGAAGCATGAAGGTACTTCAATCTGGAAACTGGTTCTGGAACAATTTAATGACACATTAGTTAGGATTCTATTAGCTGCAGCAGTTGTATCTTTTGTTCTTGCATGGTATGATGGCGATGAAGGAGGTGAGATGAGGATTACGGCATTTGTGGAGCCTTTAGTTATTTTCTTGATTTTGATTGTCAATGCCATTGTTGGTGTTTGGCAAGAGAACAATGCTGAGAAAGCATTGGAAGCCCTTAAAGAAATTCAGTCTGAACAGGCTTCAGTTATAAGAAATGGTAAACGATCTTCAATTGTTGCTAAGGACCTTGTTCCCGGTGATATAGTAGAGCTTAGAGTTGGGGATAAGGTGCCTGCTGACATGCGAGTATTGCGTCTAATCAGCTCAACTTTTCGGGTTGAGCAGGGGTCCTTGACAGGTGAGAGTGAAGCTGTGAGCAAGACTTCTAAGGCTGTGCCAGAAGATACAGATATACAAGGGAAAAAGTGTATGGTTTTTGCTGGGACAACAGTTGTCAATGGAAATTGTATTTGCTTTGTTACTCAGACAGGGATGAGCACTGAACTAGGACAGGTGCATTCTCAGATACAGGAAGCATCTGAAAGTGAAGATGACACACCATTGAAGAAAAAGTTGAATGAGTTTGGAGAGCTCTTAACAGCAATAATTGGAGTGATCTGTGCTCTAGTTTGGCTTATCAATGTCAAATACTTCCTTACTTGGGAATATGTTGATGGGTGGCCAGCAAATTTCAAGTTCTCGTTTGAGAAATGTACGTATTACTTTGAGATAGCCGTGGCATTGGCTGTTGCTGCAATTCCAGAAGGTTTGCCTGCAGTCATAACTACATGCTTGGCACTTGGCACCCGCAAGATGGCCCAAAAGAATGCCCTTGTTCGAAAGCTTCCCAGTGTTGAAACTCTTGGCTGTACAACTGTTATATGTTCTGATAAGACAGGTACTCTAACAACTAATCAGATGGCTGTAGCAAAAATTGTTGCCCTTGGTTCTCGTGTTGGTACTCTGCGAGCCTTTGATGTGGAAGGGACTACATATGATCCCTTGGATGGAAGAATCGTTGGATGGCTTGGAAGTCAACTGGATGCCAATCTGCAAATGTTGGCAAAGATTGCAGCCGTCTGTAATGATGCAGGTGTTGAAAAATCTGGCCATCATTTTGTTGCAAATGGAATGCCTACTGAAGCAGCCTTGAAGGTTCTTGTGGAAAAGATGGGGCTTCCTGAAGGATACGATTCAAGTTCAGCTTCCACTAATGGGGGTGTTGTCCTGCAATGCTGCCAAGTTTGGAATAAGAATGAGCAACGCATTGCTACTCTTGAGTTTGACCGAGACCGAAAATCCATGGGAGTTATCACAAATTCTAGCTCAGGGAAGAAGTCATTACTCGTGAAGGGTGCTGTTGAAAATCTTTTGGAACGGAGTTCATTTATTCAACTGCTCGATGGATCTATTGTGGAGTTAGACTCAGAGTCAAAAGCAAACCTCTTAGCTGTCTTACGTGAGATGTCATCAAGTGCATTACGGTGTTTAGGTTTTGCGTACAAGGAGGATCTTCCTGAATTTTCCACTTATAATAATGGTGACGAAGATCATCCAGCACATCAGCTTTTACTTGACCCATCCAATTATTCTGCGATTGAAAGCAATCTTATTTTTGCTGGCTTTGTTGGGTTAAGAGATCCTCCTCGAAAAGAGGTTCATCAAGCAATTGAAGACTGTAAGGCTGCTGGTATTCGTGTGATGGTTATCACAGGGGATAACCAGAACACAGCTGAAGCAGTATGTCGAGAAATAGGTGTATTTGGACGACATGAAGCTATAAGCTCCAGAAGTTTAACCGGAAAAGAATTCATGGCAATGAGCCGACCGGATCAAAAATCTTATTTGAGACAAGATGGAGGACTTCTTTTCTCGAGGGCTGAACCTAGACATAAACAAGAGATAGTAAGATTGCTCAAGGAAGATGGTGAAGTTGTTGCAATGACAGGAGATGGAGTCAATGATGCACCTGCTTTGAAGTTGGCTGATATTGGGATTGCTATGGGCATTTCTGGGACAGAGGTTGCGAAGGAAGCCTCCGACATGGTTCTTGCAGACGACAATTTCAGTACAATAGTTGCAGCAGTTGGTGAAGGCAGATCCATTTACAACAATATGAAGGCTTTTATCAGGTACATGATTTCCTCAAATATTGGAGAGGTTGCATCTATATTTTTGACAGCAGCACTGGGTATTCCCGAAGGGATGATCCCTGTTCAGCTTCTCTGGGTTAATCTTGTGACAGATGGACCTCCAGCAACTGCATTGGGATTCAATCCACCCGATACCGATATAATGAAGAAGCAGCCAAGAAGAAGCGACGACTCGTTGATCACAGCCTGGATTTTGTTCCGCTACTTGGTGATTGGACTTTACGTAGGGGCGGCAACTGTTGGAGTATTTATTATTTGGTATACACATGCTTCATTCTTGGGCATCGACCTGTCTGGAGACGGTCACAGTTTGGTGTCTTACTCTCAGCTCGCCAACTGGGGTCAGTGTTCATCCTGGGAAGGGTTTTCCGTGTCGCCCTTCACAGCCGGAGATCAAGTCTTCAGCTTTGATTCCGATCCATGCGAGTACTTTCGATCAGGCAAGATCAAGGCCTCGACTCTCTCACTCTCCGTTTTGGTTGCCATTGAGATGTTCAATTCCCTCAATGCCCTCTCCGAGGATGGAAGCTTGTTGACAATGCCTCCTTGGGTTAACCCGTGGCTCCTCCTCGCCATGTCTGTTTCATTTGGCTTGCATTTTTTGATCCTGTATGTGCCAATCCTCGCCCAAATTTTCGGCATTGTCCCTCTATCCTTGAATGAATGGCTCTTGGTTCTGGCTGTGGCACTGCCCGTGATCTTAATTGATGAGATTCTGAAATTTGTGGGAAGGCTTACGAGCGGGTTGAGGACATCTCGCCCGAGCAGATCATCGAAGCAGAAATCGGAGTAG 3201 44.24 MGRGGENNGKKEIFAANSSSKEAYPAWARDVQECVEKYQVDPDLGLSSEDVEKQRKIYGFNELEKHEGTSIWKLVLEQFNDTLVRILLAAAVVSFVLAWYDGDEGGEMRITAFVEPLVIFLILIVNAIVGVWQENNAEKALEALKEIQSEQASVIRNGKRSSIVAKDLVPGDIVELRVGDKVPADMRVLRLISSTFRVEQGSLTGESEAVSKTSKAVPEDTDIQGKKCMVFAGTTVVNGNCICFVTQTGMSTELGQVHSQIQEASESEDDTPLKKKLNEFGELLTAIIGVICALVWLINVKYFLTWEYVDGWPANFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKIVALGSRVGTLRAFDVEGTTYDPLDGRIVGWLGSQLDANLQMLAKIAAVCNDAGVEKSGHHFVANGMPTEAALKVLVEKMGLPEGYDSSSASTNGGVVLQCCQVWNKNEQRIATLEFDRDRKSMGVITNSSSGKKSLLVKGAVENLLERSSFIQLLDGSIVELDSESKANLLAVLREMSSSALRCLGFAYKEDLPEFSTYNNGDEDHPAHQLLLDPSNYSAIESNLIFAGFVGLRDPPRKEVHQAIEDCKAAGIRVMVITGDNQNTAEAVCREIGVFGRHEAISSRSLTGKEFMAMSRPDQKSYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGISGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDTDIMKKQPRRSDDSLITAWILFRYLVIGLYVGAATVGVFIIWYTHASFLGIDLSGDGHSLVSYSQLANWGQCSSWEGFSVSPFTAGDQVFSFDSDPCEYFRSGKIKASTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPILAQIFGIVPLSLNEWLLVLAVALPVILIDEILKFVGRLTSGLRTSRPSRSSKQKSE 1066
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19121131 19126964 - Sed0024911.1 Sed13g1363 734873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1363 1066 Gene3D - 390 633 IPR023299 GO:0000166(InterPro)
Sed13g1363 1066 NCBIfam HAD-IC family P-type ATPase 319 401 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed13g1363 1066 NCBIfam HAD-IC family P-type ATPase 118 307 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed13g1363 1066 NCBIfam HAD-IC family P-type ATPase 708 818 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed13g1363 1066 SFLD p-type atpase 361 786 IPR044492 -
Sed13g1363 1066 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 390 633 - -
Sed13g1363 1066 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 251 409 - -
Sed13g1363 1066 Pfam E1-E2 ATPase 147 360 - -
Sed13g1363 1066 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1047 IPR023298 -
Sed13g1363 1066 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 387 630 IPR023299 GO:0000166(InterPro)
Sed13g1363 1066 SFLD C1.7: P-type atpase like 361 786 - -
Sed13g1363 1066 PRINTS P-type cation-transporting ATPase superfamily signature 758 770 - -
Sed13g1363 1066 PRINTS P-type cation-transporting ATPase superfamily signature 199 213 - -
Sed13g1363 1066 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Sed13g1363 1066 PRINTS P-type cation-transporting ATPase superfamily signature 734 753 - -
Sed13g1363 1066 PRINTS P-type cation-transporting ATPase superfamily signature 626 637 - -
Sed13g1363 1066 PRINTS P-type cation-transporting ATPase superfamily signature 648 658 - -
Sed13g1363 1066 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 798 1052 - -
Sed13g1363 1066 SUPERFAMILY Calcium ATPase, transduction domain A 149 259 IPR008250 -
Sed13g1363 1066 Gene3D - 377 779 IPR023214 -
Sed13g1363 1066 Pfam Cation transporting ATPase, C-terminus 820 1045 IPR006068 -
Sed13g1363 1066 Pfam haloacid dehalogenase-like hydrolase 626 748 - -
Sed13g1363 1066 PANTHER CALCIUM-TRANSPORTING ATPASE 28 1050 - GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER)
Sed13g1363 1066 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Sed13g1363 1066 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Sed13g1363 1066 Gene3D - 45 262 - -
Sed13g1363 1066 FunFam Calcium-transporting ATPase, putative 128 262 - -
Sed13g1363 1066 ProSitePatterns E1-E2 ATPases phosphorylation site. 382 388 IPR018303 -
Sed13g1363 1066 Gene3D - 77 1047 - -
Sed13g1363 1066 FunFam Calcium-transporting P-type ATPase, putative 627 779 - -
Sed13g1363 1066 Pfam Cation transport ATPase (P-type) 444 549 - -
Sed13g1363 1066 SUPERFAMILY HAD-like 378 838 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1060 Sed-Chr1:7912554 Sed13g1363 Sed-Chr13:19121131 0.00E+00 dispersed
Sed12g2309 Sed-Chr12:33241248 Sed13g1363 Sed-Chr13:19121131 9.70E-57 dispersed
Sed13g1363 Sed-Chr13:19121131 Sed13g1802 Sed-Chr13:23042008 1.90E-93 dispersed
Sed10g1165 Sed-Chr10:18623604 Sed13g1363 Sed-Chr13:19121131 3.00E-226 transposed
Sed01g1059 Sed-Chr1:7912554 Sed13g1363 Sed-Chr13:19121131 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1363 K01537 - csv:101206729 1944.47