Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1378 ATGGCGAAAATCCTCATTTCATCCTCACCGTTCATCGGCTCATCTCTCCCAAATCTCTCTCGCCATGGCCGCCTCCACACCCTTCCTCACCGGCGACACGTCGCCACCAGAGTCAATTTCAGCTTCCATGAGATTCCCCCAATCCACGCCTTCAATTTCGAGCCAGTGCTTAGCAAAGCCGAACGCCTACTCTACACGCTTGCCGATGCTGCCGTTGCCGTGGATTCCACTGTTTCCGGTGCCGCGGCGCCGAAGAACGGTGGATGGTTTGGATTCATCTCTGAGGCCATGGAATTGGTTCTCAAAGTGTTGAAGGATGGACTTTCGGCTGTGCATGTGCCATATGCATATGGATTTGCAATTATATTACTCACTGTTATCGTTAAGGTTGCAACTTTGCCTCTCACCAAGCAACAGGTTGAGTCAACATTGGCTATGCAAAACCTTCAACCAAAGATTAAAGCCATCCAACAAAGATATGCAGGCAATCAGGAAAGAATACAACTTGAAACGTCGCGGCTTTATAAACAAGCTGGAGTTAATCCTTTGGCAGGGTGTTTACCAACTTTGGCCACCATACCAGTGTGGATTGGACTATATCAAGCCCTTTCTAATGTAGCAAATGAGGGATTATTCACTGAAGGTTTCTTTTGGATTCCCTCTCTTGGTGGACCAACTACTATTGCTGCTCGACAAAGTGGAGCTGGAATCTCTTGGTTGTTTCCTTTTGTGGATGGTCATCCACCATTAGGCTGGTCTGACACTGCAGCATACCTTGTATTACCTGTTCTTCTCGTCGTATCTCAGTATGTGTCGATGGAAATCATGAAGCCTCCCCAGACTGATGATCCAGCACAAAAGAACACACTCCTTATTTTCAAGTTTCTTCCCCTCATGATCGGTTACTTCTCTTTGTCTGTTCCATCAGGATTATCCATTTACTGGTTCACAAACAATGTTCTCAGCACGGCTCAGCAAGTATGGCTACGCAAATTAGGAGGTGCAAAGCCTGCTGTAAGTGAGGATGCTGCTGGAATCATAACGGCAGGACGTGCCAAACGAACGCCTGAATCAGAAAGAACGGGCGACAGATTTAGGCAGTTGAGGGAAGAAGAGAAAAAGAATAAGTTAAGCAAGGCAGCTCGATCAGAAGAGATTCAAACTTTGGCTTCTGAGTCTGATAATGAGGATGGGTATGATGGGGAGACAACTGAGAAGGGTGAGGACAGTCTAGAAGAGGCATATGCATCAAATGGAGAGAAAGACATCCCAGCCTATAATCGACAAAAGAGAAGCAAGCGATCAAAGAGAAAACGTGCGGTATGA 1326 46.61 MAKILISSSPFIGSSLPNLSRHGRLHTLPHRRHVATRVNFSFHEIPPIHAFNFEPVLSKAERLLYTLADAAVAVDSTVSGAAAPKNGGWFGFISEAMELVLKVLKDGLSAVHVPYAYGFAIILLTVIVKVATLPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTTIAARQSGAGISWLFPFVDGHPPLGWSDTAAYLVLPVLLVVSQYVSMEIMKPPQTDDPAQKNTLLIFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPAVSEDAAGIITAGRAKRTPESERTGDRFRQLREEEKKNKLSKAARSEEIQTLASESDNEDGYDGETTEKGEDSLEEAYASNGEKDIPAYNRQKRSKRSKRKRAV 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19246845 19252194 - Sed0016000.1 Sed13g1378 734888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1378 441 Pfam 60Kd inner membrane protein 117 331 IPR028055 -
Sed13g1378 441 NCBIfam membrane protein insertase YidC 117 330 IPR028055 -
Sed13g1378 441 PANTHER OXA1 37 375 IPR001708 GO:0009535(PANTHER)|GO:0010027(PANTHER)|GO:0016020(InterPro)|GO:0032977(InterPro)|GO:0032977(PANTHER)|GO:0051205(PANTHER)|GO:0072598(PANTHER)
Sed13g1378 441 CDD 5TM_YidC_Alb3 118 331 IPR047196 -
Sed13g1378 441 MobiDBLite consensus disorder prediction 370 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0012 Sed-Chr4:85787 Sed13g1378 Sed-Chr13:19246845 1.10E-118 dispersed
Sed04g0013 Sed-Chr4:85787 Sed13g1378 Sed-Chr13:19246845 4.20E-110 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1378 K03217 - csv:101217620 747.658