Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1380 ATGGATTTCTCTTCTATTCCACTCTATTTAGATCCTCCTCCCAATTGGCATCAAATAACTAATAATGGATCTCCTCAGCAACATCAGCTTCTTTCACTACCAAATCAACAACTGCCAACTGCACCGCCATCATCCCATGTCGGTAGCTCGATCCAGCGTGGTTCTATGGCGGACCGAGCTCGGATGGCCAACGTCCCGCTGCCCGAGATGGCGCTCAAGTGTCCTCGATGCGATTCAACCAACACGAAGTTTTGTTACTTTAACAACTATAGCCTCTCTCAACCTCGCCACTTCTGCAAGGCCTGCCGCCGATACTGGACTCGCGGTGGTGCCCTTCGAAGCGTCCCGGTCGGCGGCGGGTTTCGTCGGAATAAGAAGAGTAAAAGTAGATGCTCGAAGTCTCCGGCGGCTGGGAACGAAGGCGCGCAGCTGAATAACAATAACAACTCAAACTCACCCACCACTACTATTCCCTTGCACAGCAGTACTGAGAATATTGTTGGCAATTTACAGCCTCAATATCCTCACCTCTCATTGATGGCTTCATTGAATAACTTGTCTCGATACGGAGCAACGAATCTAGGGTTGAATTTCAATGAGATCCAGGCTCAAGGCGCTCGAGATATCAGAAACGACGCCCTTCTGAATCATCAATGGCGCAATTCTCAAAACTTTTCTCTCTTGGGTGCCCTAGAAACCCCAACCGGGTTGCGCTCGCTTCAAATGAGCGAGCGCCGCGGTAACAACGACGCGATAAATTCAATCCCAACACCAAATTCAAGGGCTACCCAGTTGCCTCCAGTGAACATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCAAACTTGAGTGATAACAATCAGTTTTGGAGAAATGGATCAAATGGTTGGACAGATCTTTCAGCTATAAGTTCTGCTTCAAGTGGCCATATTTCTTGCAACTTCAATCATTAG 957 47.75 MDFSSIPLYLDPPPNWHQITNNGSPQQHQLLSLPNQQLPTAPPSSHVGSSIQRGSMADRARMANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRSVPVGGGFRRNKKSKSRCSKSPAAGNEGAQLNNNNNSNSPTTTIPLHSSTENIVGNLQPQYPHLSLMASLNNLSRYGATNLGLNFNEIQAQGARDIRNDALLNHQWRNSQNFSLLGALETPTGLRSLQMSERRGNNDAINSIPTPNSRATQLPPVNIEETQVLNLLKSSNLSDNNQFWRNGSNGWTDLSAISSASSGHISCNFNH 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19271891 19273703 - Sed0022521.1 Sed13g1380 734890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1380 318 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 62 202 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1380 318 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed13g1380 318 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed13g1380 318 MobiDBLite consensus disorder prediction 116 160 - -
Sed13g1380 318 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed13g1380 318 MobiDBLite consensus disorder prediction 131 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0886 Sed-Chr1:6413816 Sed13g1380 Sed-Chr13:19271891 1.00E-44 dispersed
Sed04g2829 Sed-Chr4:40196822 Sed13g1380 Sed-Chr13:19271891 2.30E-42 dispersed
Sed07g2483 Sed-Chr7:40537389 Sed13g1380 Sed-Chr13:19271891 1.30E-45 dispersed
Sed13g1380 Sed-Chr13:19271891 Sed14g1464 Sed-Chr14:23103815 1.10E-25 dispersed
Sed13g1380 Sed-Chr13:19271891 Sed13g1381 Sed-Chr13:19271891 3.30E-174 tandem
Sed01g1076 Sed-Chr1:8089939 Sed13g1380 Sed-Chr13:19271891 8.60E-105 wgd
Sed13g1380 Sed-Chr13:19271891 Sed05g2954 Sed-Chr5:40315474 1.20E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40429 PF02701 zf-Dof 2.70E-32 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1380 - - - 0.0