Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1381 ATGGATTTCTCTTCTATTCCACTCTATTTAGATCCTCCTCCCAATTGGCATCAACAACATCAGCTTCTTTCACTACCAAATCAACAACTGCCAACTGCACCGCCATCATCCCATGTCGGTAGCTCGATCCAGCGTGGTTCTATGGCGGACCGAGCTCGGATGGCCAACGTCCCGCTGCCCGAGATGGCGCTCAAGTGTCCTCGATGCGATTCAACCAACACGAAGTTTTGTTACTTTAACAACTATAGCCTCTCTCAACCTCGCCACTTCTGCAAGGCCTGCCGCCGATACTGGACTCGCGGTGGTGCCCTTCGAAGCGTCCCGGTCGGCGGCGGGTTTCGTCGGAATAAGAAGAGTAAAAGTAGATGCTCGAAGTCTCCGGCGGCTGGGAACGAAGGCGCGCAGCTGAATAACAATAACAACTCAAACTCACCCACCACTACTATTCCCTTGCACAGCAGTACTGAGAATATTGTTGGCAATTTACAGCCTCAATATCCTCACCTCTCATTGATGGCTTCATTGAATAACTTGTCTCGATACGGAGCAACGAATCTAGGGTTGAATTTCAATGAGATCCAGGCTCAAGGCGCTCGAGATATCAGAAACGACGCCCTTCTGAATCATCAATGGCGCAATTCTCAAAACTTTTCTCTCTTGGGTGCCCTAGAAACCCCAACCGGGTTGCGCTCGCTTCAAATGAGCGAGCGCCGCGGTAACAACGACGCGATAAATTCAATCCCAACACCAAATTCAAGGGCTACCCAGTTGCCTCCAGTGAACATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCAAACTTGAGTGATAACAATCAGTTTTGGAGAAATGGATCAAATGGTTGGACAGATCTTTCAGCTATAAGTTCTGCTTCAAGTGGCCATATTTCTTGCAACTTCAATCATTAG 933 48.12 MDFSSIPLYLDPPPNWHQQHQLLSLPNQQLPTAPPSSHVGSSIQRGSMADRARMANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRSVPVGGGFRRNKKSKSRCSKSPAAGNEGAQLNNNNNSNSPTTTIPLHSSTENIVGNLQPQYPHLSLMASLNNLSRYGATNLGLNFNEIQAQGARDIRNDALLNHQWRNSQNFSLLGALETPTGLRSLQMSERRGNNDAINSIPTPNSRATQLPPVNIEETQVLNLLKSSNLSDNNQFWRNGSNGWTDLSAISSASSGHISCNFNH 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19271891 19273703 - Sed0022521.2 Sed13g1381 734891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1381 310 ProSiteProfiles Zinc finger Dof-type profile. 64 118 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed13g1381 310 MobiDBLite consensus disorder prediction 108 152 - -
Sed13g1381 310 Pfam Dof domain, zinc finger 63 118 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed13g1381 310 ProSitePatterns Zinc finger Dof-type signature. 66 102 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed13g1381 310 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 56 208 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1381 310 MobiDBLite consensus disorder prediction 123 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1076 Sed-Chr1:8089939 Sed13g1381 Sed-Chr13:19271891 3.20E-99 dispersed
Sed05g2954 Sed-Chr5:40315474 Sed13g1381 Sed-Chr13:19271891 1.10E-49 dispersed
Sed13g1381 Sed-Chr13:19271891 Sed14g1464 Sed-Chr14:23103815 1.10E-25 dispersed
Sed13g1380 Sed-Chr13:19271891 Sed13g1381 Sed-Chr13:19271891 3.30E-174 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40430 PF02701 zf-Dof 2.60E-32 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1381 - - - 0.0