Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed13g1382 | ATGGTGGAAGATAACGGAGCTCTGGTTCAGAGCTTGATCGATCTTGTGAACGAGATTGCGTGGATCTCGGATTTTAGGCTTACGGTTAAGAAGCAGTATTGCAATTTGTGTAGGAGATTGAAGCTTTTGATTCCAATGTTTGAAGAGATTAGGGATAGCAAACAGCCAGTCCCTCAGGATACTCTCAGCGCTCTCGTATTGTTCAAAGAAGCTCTCCAATCCGCCAAGAAATTGCTCAGATTCGGAACCGAGGGGAGTAAGATATTCTTGGCCTTAGAGAGGGAGCAAATCATGAACAAATTTTACGAAGTAACGGCTCAATTGGAACAAGCTTTGGAAGGAATAGCTTATGACAAACTTGATATATCCGATGAAGTTAAAGAGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAAAGCCAAAGGCAGGGCCGATGCACCTGACTCTGAACTGTTGGAAGATGTCTTTGCCCTTTACAACACAAACAATGATTCTCCTTTAGATCAAGATCGCCTAAGGAGATTAGCTGAAAAATTGCAATTATTTGGAATAACCGATCTTACAGAAGAGTCCATAGCTTTGCATGAGATGGTTACTGCTAGTGGAGGTGATCCAGGTAAGAGCATTGAGAAGATGTCAGGGATGCTGAAGAAAATAAAAGATTTTGTGCAAACGGAGAACCTCGAAACGAACACTCATGGCAGAGACAAGAGTCCTCCAGCTAGTTGTAGTGCACAAGTGTCCAATGAGAAAAGCAATAAGGCCCCAACTATACCAGATGATTTTCGCTGCCCCATATCCCTTGAGTTGATGAGAGATCCTGTAATTGTCTCAACTGGACAGACCTACGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCATGGGACGTGTCCAAAGACACAACAGAACCTTTCAAGCACTACTCTTACCCCCAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGCGAGGATAATGGTATCGAACCGCCAAAACGACCCAGCAGTGCTAGGCCATGTAGAAGCTCATCATCTTGCTCACCTGCTGAACGCACAAAGATCGTTATTCTGCTTTGCAAACTTGCATCAGGAAACCCTGAAGACCAGCGATCTGCAGCTGGTGAGATCCGACTTCTTGCGAAACGGAATGCAGATAATCGCGTTGCCATTGCTGAGGCTGGTGCAATACCTCTCCTTGTTGGCCTTCTTTCAACTTCAGACTCTCGTGTTCAAGAGCATGCTGTAACAGCCCTTCTTAACCTTTCTATATGTGAGAACAACAAAGGAAGCATCATATCATCCGGGGCAGTTCCCGGCATTGTTCACGTGCTCAAGAAAGGGAGCATGGAAGCCCGGGAGAATGCGGCAGCCACTCTTTTCAGCCTTTCGGTCGTGGACGAAAATAAAGTTAGAATTGGTGCCTCTGGAGCTATCCCACCGCTCGTTACATTGCTTTGCGAAGGCACTCAAAGGGGTAAGAAAGATGCTGCGACTGCTCTTTTCAACTTGTGCATCTACCAAAGGAACAAGGGAAAGGCACTGAGAGCTGGTGTAGTTCCAACCTTGATGCAGCTTCTCACCGAACCTGGAACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAGTACTCGCTAGCCATCCCGAAGGGAAAGCTGCCATCGGTTCCGCAAAGGCAGTGCCGGTTTTGGTAGATGTTATTGGGACAGGCTCCCCCAGGAACAGAGAGAATGCAGCTGCAGTTCTCGTGCACCTCTGCTCTGGAGACGAACAACACCTAGTAGAGGCCAGGGATCTTGGAGTGATCAGTTCATTGATAGATTTGGCACAAAACGGCACGGATAGGGGCAAGAGAAAAGCTGTGCAGTTGCTCGATCGAATGAACCGACTCTCCTAG | 1902 | 47.16 | MVEDNGALVQSLIDLVNEIAWISDFRLTVKKQYCNLCRRLKLLIPMFEEIRDSKQPVPQDTLSALVLFKEALQSAKKLLRFGTEGSKIFLALEREQIMNKFYEVTAQLEQALEGIAYDKLDISDEVKEQVELVLAQFRKAKGRADAPDSELLEDVFALYNTNNDSPLDQDRLRRLAEKLQLFGITDLTEESIALHEMVTASGGDPGKSIEKMSGMLKKIKDFVQTENLETNTHGRDKSPPASCSAQVSNEKSNKAPTIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEDNGIEPPKRPSSARPCRSSSSCSPAERTKIVILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTSDSRVQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLCEGTQRGKKDAATALFNLCIYQRNKGKALRAGVVPTLMQLLTEPGTGMVDEALAILAVLASHPEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARDLGVISSLIDLAQNGTDRGKRKAVQLLDRMNRLS | 633 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 19282203 | 19286947 | - | Sed0006027.1 | Sed13g1382 | 734892 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed13g1382 | 633 | SUPERFAMILY | ARM repeat | 355 | 629 | IPR016024 | - | |
| Sed13g1382 | 633 | FunFam | RING-type E3 ubiquitin transferase | 340 | 633 | - | - | |
| Sed13g1382 | 633 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 519 | 561 | IPR000225 | GO:0005515(InterPro) | |
| Sed13g1382 | 633 | MobiDBLite | consensus disorder prediction | 230 | 255 | - | - | |
| Sed13g1382 | 633 | Pfam | U-box domain | 258 | 328 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Sed13g1382 | 633 | SMART | arm_5 | 508 | 548 | IPR000225 | GO:0005515(InterPro) | |
| Sed13g1382 | 633 | SMART | arm_5 | 385 | 425 | IPR000225 | GO:0005515(InterPro) | |
| Sed13g1382 | 633 | SMART | arm_5 | 426 | 466 | IPR000225 | GO:0005515(InterPro) | |
| Sed13g1382 | 633 | SMART | arm_5 | 344 | 383 | IPR000225 | GO:0005515(InterPro) | |
| Sed13g1382 | 633 | SMART | arm_5 | 591 | 631 | IPR000225 | GO:0005515(InterPro) | |
| Sed13g1382 | 633 | SMART | arm_5 | 467 | 507 | IPR000225 | GO:0005515(InterPro) | |
| Sed13g1382 | 633 | SMART | arm_5 | 549 | 589 | IPR000225 | GO:0005515(InterPro) | |
| Sed13g1382 | 633 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 396 | 438 | IPR000225 | GO:0005515(InterPro) | |
| Sed13g1382 | 633 | ProSiteProfiles | U-box domain profile. | 257 | 331 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Sed13g1382 | 633 | FunFam | RING-type E3 ubiquitin transferase | 258 | 331 | - | - | |
| Sed13g1382 | 633 | SUPERFAMILY | RING/U-box | 247 | 334 | - | - | |
| Sed13g1382 | 633 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 255 | 331 | IPR013083 | - | |
| Sed13g1382 | 633 | Gene3D | - | 496 | 632 | IPR011989 | - | |
| Sed13g1382 | 633 | Gene3D | - | 337 | 493 | IPR011989 | - | |
| Sed13g1382 | 633 | FunFam | RING-type E3 ubiquitin transferase | 5 | 118 | - | - | |
| Sed13g1382 | 633 | Gene3D | - | 7 | 117 | IPR036537 | GO:0007166(InterPro) | |
| Sed13g1382 | 633 | PANTHER | U BOX DOMAIN-CONTAINING | 29 | 630 | - | - | |
| Sed13g1382 | 633 | SMART | Ubox_2 | 261 | 324 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Sed13g1382 | 633 | Pfam | Armadillo/beta-catenin-like repeat | 468 | 506 | IPR000225 | GO:0005515(InterPro) | |
| Sed13g1382 | 633 | Pfam | Armadillo/beta-catenin-like repeat | 385 | 424 | IPR000225 | GO:0005515(InterPro) | |
| Sed13g1382 | 633 | Pfam | Armadillo/beta-catenin-like repeat | 550 | 589 | IPR000225 | GO:0005515(InterPro) | |
| Sed13g1382 | 633 | CDD | RING-Ubox_PUB | 259 | 311 | IPR045210 | - | |
| Sed13g1382 | 633 | MobiDBLite | consensus disorder prediction | 230 | 258 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g3004 | Sed-Chr5:40619774 | Sed13g1382 | Sed-Chr13:19282203 | 1.10E-80 | dispersed | |
| Sed06g2015 | Sed-Chr6:44267168 | Sed13g1382 | Sed-Chr13:19282203 | 8.80E-115 | dispersed | |
| Sed07g0494 | Sed-Chr7:3768899 | Sed13g1382 | Sed-Chr13:19282203 | 4.50E-20 | dispersed | |
| Sed07g0495 | Sed-Chr7:3770436 | Sed13g1382 | Sed-Chr13:19282203 | 7.70E-20 | dispersed | |
| Sed08g2733 | Sed-Chr8:39121108 | Sed13g1382 | Sed-Chr13:19282203 | 5.40E-52 | dispersed | |
| Sed11g1664 | Sed-Chr11:31926072 | Sed13g1382 | Sed-Chr13:19282203 | 2.80E-41 | dispersed | |
| Sed13g0893 | Sed-Chr13:6611186 | Sed13g1382 | Sed-Chr13:19282203 | 8.20E-27 | dispersed | |
| Sed13g0894 | Sed-Chr13:6611186 | Sed13g1382 | Sed-Chr13:19282203 | 9.20E-20 | dispersed | |
| Sed13g1382 | Sed-Chr13:19282203 | Sed14g0585 | Sed-Chr14:5876462 | 8.00E-39 | dispersed | |
| Sed13g1382 | Sed-Chr13:19282203 | Sed13g1383 | Sed-Chr13:19282203 | 1.70E-190 | tandem | |
| Sed01g1683 | Sed-Chr1:12197376 | Sed13g1382 | Sed-Chr13:19282203 | 6.80E-07 | transposed | |
| Sed03g0156 | Sed-Chr3:967307 | Sed13g1382 | Sed-Chr13:19282203 | 1.00E-10 | transposed | |
| Sed01g1077 | Sed-Chr1:8109319 | Sed13g1382 | Sed-Chr13:19282203 | 2.60E-218 | wgd | |
| Sed13g1382 | Sed-Chr13:19282203 | Sed05g2955 | Sed-Chr5:40327452 | 8.80E-155 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed13g1382 | K27628 | - | csv:101218572 | 1048.88 |