Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1383 ATGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAAAGCCAAAGGCAGGGCCGATGCACCTGACTCTGAACTGTTGGAAGATGTCTTTGCCCTTTACAACACAAACAATGATTCTCCTTTAGATCAAGATCGCCTAAGGAGATTAGCTGAAAAATTGCAATTATTTGGAATAACCGATCTTACAGAAGAGTCCATAGCTTTGCATGAGATGGTTACTGCTAGTGGAGGTGATCCAGGTAAGAGCATTGAGAAGATGTCAGGGATGCTGAAGAAAATAAAAGATTTTGTGCAAACGGAGAACCTCGAAACGAACACTCATGGCAGAGACAAGAGTCCTCCAGCTAGTTGTAGTGCACAAGTGTCCAATGAGAAAAGCAATAAGGCCCCAACTATACCAGATGATTTTCGCTGCCCCATATCCCTTGAGTTGATGAGAGATCCTGTAATTGTCTCAACTGGACAGACCTACGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCATGGGACGTGTCCAAAGACACAACAGAACCTTTCAAGCACTACTCTTACCCCCAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGCGAGGATAATGGTATCGAACCGCCAAAACGACCCAGCAGTGCTAGGCCATGTAGAAGCTCATCATCTTGCTCACCTGCTGAACGCACAAAGATCGTTATTCTGCTTTGCAAACTTGCATCAGGAAACCCTGAAGACCAGCGATCTGCAGCTGGTGAGATCCGACTTCTTGCGAAACGGAATGCAGATAATCGCGTTGCCATTGCTGAGGCTGGTGCAATACCTCTCCTTGTTGGCCTTCTTTCAACTTCAGACTCTCGTGTTCAAGAGCATGCTGTAACAGCCCTTCTTAACCTTTCTATATGTGAGAACAACAAAGGAAGCATCATATCATCCGGGGCAGTTCCCGGCATTGTTCACGTGCTCAAGAAAGGGAGCATGGAAGCCCGGGAGAATGCGGCAGCCACTCTTTTCAGCCTTTCGGTCGTGGACGAAAATAAAGTTAGAATTGGTGCCTCTGGAGCTATCCCACCGCTCGTTACATTGCTTTGCGAAGGCACTCAAAGGGGTAAGAAAGATGCTGCGACTGCTCTTTTCAACTTGTGCATCTACCAAAGGAACAAGGGAAAGGCACTGAGAGCTGGTGTAGTTCCAACCTTGATGCAGCTTCTCACCGAACCTGGAACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAGTACTCGCTAGCCATCCCGAAGGGAAAGCTGCCATCGGTTCCGCAAAGGCAGTGCCGGTTTTGGTAGATGTTATTGGGACAGGCTCCCCCAGGAACAGAGAGAATGCAGCTGCAGTTCTCGTGCACCTCTGCTCTGGAGACGAACAACACCTAGTAGAGGCCAGGGATCTTGGAGTGATCAGTTCATTGATAGATTTGGCACAAAACGGCACGGATAGGGGCAAGAGAAAAGCTGTGCAGTTGCTCGATCGAATGAACCGACTCTCCTAG 1521 48.32 MQVELVLAQFRKAKGRADAPDSELLEDVFALYNTNNDSPLDQDRLRRLAEKLQLFGITDLTEESIALHEMVTASGGDPGKSIEKMSGMLKKIKDFVQTENLETNTHGRDKSPPASCSAQVSNEKSNKAPTIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEDNGIEPPKRPSSARPCRSSSSCSPAERTKIVILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTSDSRVQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLCEGTQRGKKDAATALFNLCIYQRNKGKALRAGVVPTLMQLLTEPGTGMVDEALAILAVLASHPEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARDLGVISSLIDLAQNGTDRGKRKAVQLLDRMNRLS 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19282203 19286947 - Sed0006027.2 Sed13g1383 734893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1383 506 SMART Ubox_2 134 197 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed13g1383 506 MobiDBLite consensus disorder prediction 103 131 - -
Sed13g1383 506 SUPERFAMILY ARM repeat 227 502 IPR016024 -
Sed13g1383 506 SUPERFAMILY RING/U-box 120 207 - -
Sed13g1383 506 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 392 434 IPR000225 GO:0005515(InterPro)
Sed13g1383 506 Pfam Armadillo/beta-catenin-like repeat 341 379 IPR000225 GO:0005515(InterPro)
Sed13g1383 506 Pfam Armadillo/beta-catenin-like repeat 423 462 IPR000225 GO:0005515(InterPro)
Sed13g1383 506 Pfam Armadillo/beta-catenin-like repeat 258 297 IPR000225 GO:0005515(InterPro)
Sed13g1383 506 Gene3D - 217 502 IPR011989 -
Sed13g1383 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Sed13g1383 506 SMART arm_5 381 421 IPR000225 GO:0005515(InterPro)
Sed13g1383 506 SMART arm_5 340 380 IPR000225 GO:0005515(InterPro)
Sed13g1383 506 SMART arm_5 422 462 IPR000225 GO:0005515(InterPro)
Sed13g1383 506 SMART arm_5 217 256 IPR000225 GO:0005515(InterPro)
Sed13g1383 506 SMART arm_5 464 504 IPR000225 GO:0005515(InterPro)
Sed13g1383 506 SMART arm_5 299 339 IPR000225 GO:0005515(InterPro)
Sed13g1383 506 SMART arm_5 258 298 IPR000225 GO:0005515(InterPro)
Sed13g1383 506 MobiDBLite consensus disorder prediction 103 128 - -
Sed13g1383 506 FunFam RING-type E3 ubiquitin transferase 131 204 - -
Sed13g1383 506 Pfam U-box domain 131 201 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed13g1383 506 FunFam RING-type E3 ubiquitin transferase 213 506 - -
Sed13g1383 506 CDD RING-Ubox_PUB 132 184 IPR045210 -
Sed13g1383 506 PANTHER U BOX DOMAIN-CONTAINING 23 503 - -
Sed13g1383 506 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 269 311 IPR000225 GO:0005515(InterPro)
Sed13g1383 506 ProSiteProfiles U-box domain profile. 130 204 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1077 Sed-Chr1:8109319 Sed13g1383 Sed-Chr13:19282203 1.30E-153 dispersed
Sed05g2955 Sed-Chr5:40327452 Sed13g1383 Sed-Chr13:19282203 1.00E-105 dispersed
Sed13g1383 Sed-Chr13:19282203 Sed14g0585 Sed-Chr14:5876462 2.00E-32 dispersed
Sed13g1382 Sed-Chr13:19282203 Sed13g1383 Sed-Chr13:19282203 1.70E-190 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1383 K27628 - csv:101218572 841.647