Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1396 ATGGCTAAATTAGCAGCACACATCCTCCTCTGCATTGCATCTCTCATCTCCTCAGCATGGCCGGCCGCCGCCAGAATCCCCGGCGTCTACTCCGGCGGGGCCTGGGACAGCGCCCACGCCACCTTCTACGGCGGCTCCGACGCCTCCGGCACGATGGGCGGGGCTTGTGGGTATGGGAATTTGTACAGCCAAGGGTACGGCGTGAACACGGCGGCGCTGAGCACGGCGCTGTTCAACAATGGCCTGAGCTGCGGCGCCTGCTTCGAGATCAAATGTGCGAATGATCCACGATGGTGCCATTCGGGCAGCCCGTCCATTGTCATCACGGCCACCAATTTCTGCCCGCCCAACTTTGCTCTGCCCAGCGACAATGGCGGCTGGTGTAATCCTCCTCGTACGCATTTCGATTTGGCCATGCCTGTGTTCCTTAAGATCGCCGAATATCGCGCCGGAATTGTTCCCGTCGCTTACCGCCGGGTGGCATGCCGGAAGCAAGGCGGGATCCGGTTCACGATGCACGGGTTCAGGTACTTCAACCTGGTTCTAATCACCAACGTGGCGGGTGCAGGGGATATCGTGAGGGTGAGCGTGAAAGGCACGCGAACCGGCTGGCTGACCATGAGCCGGAACTGGGGTCAAAACTGGCAGTCAAACGCCGTCCTTGTGGGCCAGCCCCTCTCTTTTAGAGTCACCGCCGGTGACAGACGGACCTCCACCTCCTACAACGTGGCGCCCTCCCATTGGCAGTTCGGCCAGACCTTCGTCGGCAAGAATTTTAGGGTTTGA 786 60.43 MAKLAAHILLCIASLISSAWPAAARIPGVYSGGAWDSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIVITATNFCPPNFALPSDNGGWCNPPRTHFDLAMPVFLKIAEYRAGIVPVAYRRVACRKQGGIRFTMHGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWLTMSRNWGQNWQSNAVLVGQPLSFRVTAGDRRTSTSYNVAPSHWQFGQTFVGKNFRV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19376925 19379547 - Sed0000984.1 Sed13g1396 734906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1396 261 PANTHER EXPANSIN-A15 6 259 IPR002963 GO:0009664(InterPro)
Sed13g1396 261 FunFam Expansin 24 163 - -
Sed13g1396 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 167 IPR007112 -
Sed13g1396 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Sed13g1396 261 Pfam Lytic transglycolase 70 157 IPR009009 -
Sed13g1396 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576(InterPro)
Sed13g1396 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576(InterPro)
Sed13g1396 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576(InterPro)
Sed13g1396 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576(InterPro)
Sed13g1396 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576(InterPro)
Sed13g1396 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576(InterPro)
Sed13g1396 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Sed13g1396 261 Gene3D - 22 163 IPR036908 -
Sed13g1396 261 Gene3D - 167 259 IPR036749 -
Sed13g1396 261 SUPERFAMILY Barwin-like endoglucanases 11 185 IPR036908 -
Sed13g1396 261 SMART dpbb_1 70 157 IPR007112 -
Sed13g1396 261 CDD DPBB_EXPA_N 35 162 - -
Sed13g1396 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664(InterPro)
Sed13g1396 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664(InterPro)
Sed13g1396 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664(InterPro)
Sed13g1396 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664(InterPro)
Sed13g1396 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664(InterPro)
Sed13g1396 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664(InterPro)
Sed13g1396 261 PRINTS Expansin signature 92 103 IPR002963 GO:0009664(InterPro)
Sed13g1396 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664(InterPro)
Sed13g1396 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664(InterPro)
Sed13g1396 261 SUPERFAMILY PHL pollen allergen 164 255 IPR036749 -
Sed13g1396 261 FunFam Expansin 167 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2835 Sed-Chr4:40265268 Sed13g1396 Sed-Chr13:19376925 4.00E-122 dispersed
Sed11g2112 Sed-Chr11:35050955 Sed13g1396 Sed-Chr13:19376925 3.60E-96 dispersed
Sed13g1396 Sed-Chr13:19376925 Sed14g0493 Sed-Chr14:4867194 7.10E-127 dispersed
Sed04g3772 Sed-Chr4:46358086 Sed13g1396 Sed-Chr13:19376925 3.00E-74 transposed
Sed01g1092 Sed-Chr1:8212684 Sed13g1396 Sed-Chr13:19376925 4.80E-134 wgd
Sed13g1396 Sed-Chr13:19376925 Sed05g2978 Sed-Chr5:40441191 5.30E-130 wgd
Sed13g1396 Sed-Chr13:19376925 Sed07g2495 Sed-Chr7:40621356 4.20E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1396 - - - 0.0