Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1411 ATGGAAAATTTCATCGACGATTTACCCTATTCATGGAATGATTTTCTCCTCAACCCCCATCTCTCAAATGGGTTCTTCAAATTCAACCGCGAAATCGTCGATCCCCTTCAGATTCCGGCCAAGACGACGCCACAGCCACCGCCGCCGCACCAGGAGCAATCCGCTACCAGTTCTTCCTCATCGCCGTCGTTGTCGCCGTCGTCCTCCGACGGCGACTCGCCGGATAGCCATGACACCTCGAACACGATGCTCAAGTACATCTCGGAGATGTTGTTGGACGAAGAAGAGGATCTGAAGACAAAGCCATGTATGCTTTATGATGGATTGGCTTTACAAGCTGCTGAGAAGCCTTTTTATGATGTTCTTGGTAAGAAATATCCATTTTCTCCTCAGAATTTGTGCTGTGATTTGAGTTTTGAATCTGAATCTTGTTATGGAAATTCCCCTGTTGTTGTTGTTGATGATGATGATGCCCCTTTTGAAAACCCTAGTTTTAGTCATGATCTTGAGACGCAATATATTGGGCATTTTAGGCAAGGAGCTGAGGAGGCTAGTAAATTTCTTCCTGTTAATGGGAAATTTGGAACTATTGATTTGGATAATGATTTGTGTAGTTCTGTTCCTTCTAAGGCTGTTGATTTTTCTGATAGGGGTAGTTTTGGAAATGGGTTGTTTAGAGAGAAGAAGAATCGTGCAAGGGAGGATAGTGATGAGGAGTTGAGAAGTACCAAACAATCTGCTACTTTTGCTGATGATAGTTCATTGTCTGACTTGTTTGATGAAGTTTTGTTGTGTCGGGGCGAGAGTCGGCGGCAGTCCCCGTCGGGCGGTTCGGATGAGTCGGAGGAGATCGAAGCGAATAAGAAGTCGAGAGGGCGGAGGAAAGGAAAGAAGAAGAATAATACTCGTTCTAGGAAGGAAGAGAATAGTGTGGAAGTTGTGGATTTGTGGACATTGTTGACTCAATGTGCTCAGGCTGTTTCAAATTATGATCACAGGACTGCAAATCAGCTGCTTAATCAGATCAGGCAGCATTCTAATTCATCTGGGGATGGAAATAAGAGATTGGCCCATTACTTTGCCAAGGGCTTGGAGACGCGGCTTGCGGCCGGGACTCCTCTGTATATGCCCTTTGCAAGTAATGAAACTTCTGCTGCTGATATCTTGAAAGCTTATCAGGTGTTCATCAAGGCATGCCCGTTTCGGCGGATGTCGTATTTCTATGCCAATAGAACGATTTTGAAGCTAGCTGAGAAAGTATCAACGTTACATATTGTTGATTTTGGTATTTTGTATGGTCTCCAATGGCCCTGCTTGATTCAGCGGCTCTCACGTAGAACTGGTGGACCTCCCAAGCTTCGTATCACAGGGATCGAGCTTCCCCAGCCAGGATTCCGCCCCGCTGAAAGGGTTGAGCAGACGGGACGACGCCTTGCTCATTACTGCAAGAGATTCAATGTGCCATTTGAATACAAAGTCTTGGCACAAAAATGGGAAACTGTTAAATATGAGGATCTCAATGTTGATAGAGATGAATTGACTATTGTGACTTGTATCGAACGAATGAAGAATGTACCGGATGAAACCGTGGTCGCAAACAGCCCGAGAGACAGGGTTCTGAAGTTGATCAGGAAAATCAATCCAGATCTCTTCATTCATGCAGTCGTCAATGGCTCATTCAATGCCCCATTCTTCAACACGAGGTTCAAAGAGGCACTCTTTCACTACTCATCATTGTTTGACATGTACGAGGCAACTGTAGCTCGAGATAGTCCACAGAGGCATCTGTGCGAGAGGGAAATCATGGGAAGAGACATCATGAATGTCATAGCGTGCGAGGGGCTCGAGAGAGTTGAAAGGCCCGAGACGTACAAGCAATGGCAAGTGAGAAACACGAGGGCCGGGTTCAAGCAAGTACCACTAGACCTAGAACTGCTGAAGCAAGTGGAGAAGATAGTGAACACAGAATACCATCATGACTTCGTGATCGATCAGGATGGAGCATGGATGTTGCAAGGGTGGAAGGGACGGATCATCGACGGGTTGTCGTGTTGGGTAGTCGCCTAA 2067 46.06 MENFIDDLPYSWNDFLLNPHLSNGFFKFNREIVDPLQIPAKTTPQPPPPHQEQSATSSSSSPSLSPSSSDGDSPDSHDTSNTMLKYISEMLLDEEEDLKTKPCMLYDGLALQAAEKPFYDVLGKKYPFSPQNLCCDLSFESESCYGNSPVVVVDDDDAPFENPSFSHDLETQYIGHFRQGAEEASKFLPVNGKFGTIDLDNDLCSSVPSKAVDFSDRGSFGNGLFREKKNRAREDSDEELRSTKQSATFADDSSLSDLFDEVLLCRGESRRQSPSGGSDESEEIEANKKSRGRRKGKKKNNTRSRKEENSVEVVDLWTLLTQCAQAVSNYDHRTANQLLNQIRQHSNSSGDGNKRLAHYFAKGLETRLAAGTPLYMPFASNETSAADILKAYQVFIKACPFRRMSYFYANRTILKLAEKVSTLHIVDFGILYGLQWPCLIQRLSRRTGGPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEYKVLAQKWETVKYEDLNVDRDELTIVTCIERMKNVPDETVVANSPRDRVLKLIRKINPDLFIHAVVNGSFNAPFFNTRFKEALFHYSSLFDMYEATVARDSPQRHLCEREIMGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDLELLKQVEKIVNTEYHHDFVIDQDGAWMLQGWKGRIIDGLSCWVVA 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19473431 19475869 + Sed0015757.1 Sed13g1411 734921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1411 688 MobiDBLite consensus disorder prediction 225 248 - -
Sed13g1411 688 Pfam GRAS domain family 318 685 IPR005202 -
Sed13g1411 688 ProSiteProfiles GRAS family profile. 307 686 IPR005202 -
Sed13g1411 688 MobiDBLite consensus disorder prediction 269 307 - -
Sed13g1411 688 MobiDBLite consensus disorder prediction 52 80 - -
Sed13g1411 688 MobiDBLite consensus disorder prediction 38 80 - -
Sed13g1411 688 MobiDBLite consensus disorder prediction 269 290 - -
Sed13g1411 688 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 296 679 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed13g1411 688 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0841 Sed-Chr1:6144970 Sed13g1411 Sed-Chr13:19473431 1.70E-145 dispersed
Sed10g0703 Sed-Chr10:4915195 Sed13g1411 Sed-Chr13:19473431 2.20E-09 dispersed
Sed13g1411 Sed-Chr13:19473431 Sed14g1298 Sed-Chr14:21901574 6.00E-48 dispersed
Sed01g1103 Sed-Chr1:8281312 Sed13g1411 Sed-Chr13:19473431 7.40E-301 wgd
Sed13g1411 Sed-Chr13:19473431 Sed05g2984 Sed-Chr5:40472508 1.50E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40431 PF03514 GRAS 3.20E-113 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1411 K27753 - csv:101217374 1031.17