Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g1418 | ATGGGAGAAGAGGTGAAGATTTGCGATTACGAGAGCGGCGGCGGCGGCGGCGACGATGAGAATGGAGCTCCCGAGGACCGAGTTTTCGAGTGGGAGACAGGTTTGCCTGATGCCGACGATCTTACTCCTCTGTCTCAGACGCTGATTCCGCCGGAGCTTGCGTCGGCGTTCAGTATCACGACGTGCCCGTATCGGACGGCGAAGGATGTCAATCGAGCGTCGCTGAACACTCTCTCCAGTCTTCATGGATTCCAATCGCAATCGCAAGCGTTTTCGTCCAATAATTTCAAGTCGTTTAACGATGATCGGACTTGGGATCATGATCGTGATCATGATCCGATGTTGGTTGAAGGAGATGAGGCCTTGGATTCGAGGAAGTTGAGGAAGGTCGATTGTGCGGAGGAGGCTGATTCGGCTCTCCGGACTGATAATTTGACGGACGATCCGTCGGCTCGGACGTCGAAGAGACCGAGGCTTGTTTGGACGCCGCAGTTGCACAAGCGATTCGTGGACGTTGTGGCTCATCTAGGGATTAAGAATGCAGTTCCTAAGACTATTATGCAGTTGATGAATGTGGAAGGATTGACTCGTGAGAATGTTGCAAGTCATTTGCAGAAATATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCGAACGAGGGCCCGTCGTCTCCGGACCGGCTTTTCGCGTCCACCCCTGTGCCGCAGTGCTTGCACGAGTCTACCAACAGTGGCCATACGAATGGAAATGTGCATTTGACGGTTCCGACTCCGATGCCGTATGGACCGCCGATGATACCGATGCCGGTGCTTGGTCATGCTCATAGTTATATGGGTATGCCCGTAGCTCATCCGGGAAGTGCACAGGGATTCCATGGATTTGAAACTCATCCTTACAACATGATGCATCAGAGAGATTGGTCTGGAAACAAATTTGGTTCGATCGTGCCTTATCCTCATGTACCATCTACCACTACTGATAGATGA | 987 | 51.77 | MGEEVKICDYESGGGGGDDENGAPEDRVFEWETGLPDADDLTPLSQTLIPPELASAFSITTCPYRTAKDVNRASLNTLSSLHGFQSQSQAFSSNNFKSFNDDRTWDHDRDHDPMLVEGDEALDSRKLRKVDCAEEADSALRTDNLTDDPSARTSKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRLFASTPVPQCLHESTNSGHTNGNVHLTVPTPMPYGPPMIPMPVLGHAHSYMGMPVAHPGSAQGFHGFETHPYNMMHQRDWSGNKFGSIVPYPHVPSTTTDR | 328 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 19503532 | 19507239 | + | Sed0001074.2 | Sed13g1418 | 734928 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g1418 | 328 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 153 | 212 | IPR017930 | - | |
Sed13g1418 | 328 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 157 | 209 | IPR006447 | GO:0003677(InterPro) | |
Sed13g1418 | 328 | Gene3D | - | 153 | 215 | - | - | |
Sed13g1418 | 328 | Pfam | Myb-like DNA-binding domain | 159 | 208 | IPR001005 | - | |
Sed13g1418 | 328 | SUPERFAMILY | Homeodomain-like | 153 | 213 | IPR009057 | - | |
Sed13g1418 | 328 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Sed13g1418 | 328 | FunFam | Two-component response regulator | 152 | 215 | - | - | |
Sed13g1418 | 328 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 25 | 287 | IPR044841 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1113 | Sed-Chr1:8344700 | Sed13g1418 | Sed-Chr13:19503532 | 6.90E-132 | dispersed | |
Sed13g1418 | Sed-Chr13:19503532 | Sed13g1420 | Sed-Chr13:19503532 | 1.60E-192 | dispersed | |
Sed13g1417 | Sed-Chr13:19503532 | Sed13g1418 | Sed-Chr13:19503532 | 1.60E-192 | tandem | |
Sed13g1418 | Sed-Chr13:19503532 | Sed13g1419 | Sed-Chr13:19503532 | 1.60E-192 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40433 | PF00249 | Myb_DNA-binding | 1.30E-08 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g1418 | - | - | - | 0.0 |