Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1418 ATGGGAGAAGAGGTGAAGATTTGCGATTACGAGAGCGGCGGCGGCGGCGGCGACGATGAGAATGGAGCTCCCGAGGACCGAGTTTTCGAGTGGGAGACAGGTTTGCCTGATGCCGACGATCTTACTCCTCTGTCTCAGACGCTGATTCCGCCGGAGCTTGCGTCGGCGTTCAGTATCACGACGTGCCCGTATCGGACGGCGAAGGATGTCAATCGAGCGTCGCTGAACACTCTCTCCAGTCTTCATGGATTCCAATCGCAATCGCAAGCGTTTTCGTCCAATAATTTCAAGTCGTTTAACGATGATCGGACTTGGGATCATGATCGTGATCATGATCCGATGTTGGTTGAAGGAGATGAGGCCTTGGATTCGAGGAAGTTGAGGAAGGTCGATTGTGCGGAGGAGGCTGATTCGGCTCTCCGGACTGATAATTTGACGGACGATCCGTCGGCTCGGACGTCGAAGAGACCGAGGCTTGTTTGGACGCCGCAGTTGCACAAGCGATTCGTGGACGTTGTGGCTCATCTAGGGATTAAGAATGCAGTTCCTAAGACTATTATGCAGTTGATGAATGTGGAAGGATTGACTCGTGAGAATGTTGCAAGTCATTTGCAGAAATATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCGAACGAGGGCCCGTCGTCTCCGGACCGGCTTTTCGCGTCCACCCCTGTGCCGCAGTGCTTGCACGAGTCTACCAACAGTGGCCATACGAATGGAAATGTGCATTTGACGGTTCCGACTCCGATGCCGTATGGACCGCCGATGATACCGATGCCGGTGCTTGGTCATGCTCATAGTTATATGGGTATGCCCGTAGCTCATCCGGGAAGTGCACAGGGATTCCATGGATTTGAAACTCATCCTTACAACATGATGCATCAGAGAGATTGGTCTGGAAACAAATTTGGTTCGATCGTGCCTTATCCTCATGTACCATCTACCACTACTGATAGATGA 987 51.77 MGEEVKICDYESGGGGGDDENGAPEDRVFEWETGLPDADDLTPLSQTLIPPELASAFSITTCPYRTAKDVNRASLNTLSSLHGFQSQSQAFSSNNFKSFNDDRTWDHDRDHDPMLVEGDEALDSRKLRKVDCAEEADSALRTDNLTDDPSARTSKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRLFASTPVPQCLHESTNSGHTNGNVHLTVPTPMPYGPPMIPMPVLGHAHSYMGMPVAHPGSAQGFHGFETHPYNMMHQRDWSGNKFGSIVPYPHVPSTTTDR 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19503532 19507239 + Sed0001074.2 Sed13g1418 734928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1418 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 212 IPR017930 -
Sed13g1418 328 NCBIfam myb-like DNA-binding domain, SHAQKYF class 157 209 IPR006447 GO:0003677(InterPro)
Sed13g1418 328 Gene3D - 153 215 - -
Sed13g1418 328 Pfam Myb-like DNA-binding domain 159 208 IPR001005 -
Sed13g1418 328 SUPERFAMILY Homeodomain-like 153 213 IPR009057 -
Sed13g1418 328 MobiDBLite consensus disorder prediction 1 25 - -
Sed13g1418 328 FunFam Two-component response regulator 152 215 - -
Sed13g1418 328 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 25 287 IPR044841 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1113 Sed-Chr1:8344700 Sed13g1418 Sed-Chr13:19503532 6.90E-132 dispersed
Sed13g1418 Sed-Chr13:19503532 Sed13g1420 Sed-Chr13:19503532 1.60E-192 dispersed
Sed13g1417 Sed-Chr13:19503532 Sed13g1418 Sed-Chr13:19503532 1.60E-192 tandem
Sed13g1418 Sed-Chr13:19503532 Sed13g1419 Sed-Chr13:19503532 1.60E-192 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40433 PF00249 Myb_DNA-binding 1.30E-08 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1418 - - - 0.0