Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1429 ATGGGGGAAGAACTGCCAATTTTGAGAATAGAACAGTGGCATGAAGCTAGAACCCCAGTTTCTGCTAAGAAAAGGAATGTTTCATTTCCCAATTCCCCAAATGTAAAATGTTGCAATTCTGGCTGTGCATTTTCAAGATTGGAAAACACTAATTTGGAGTCATTAAATCGTTCAAAGTCAGCTATGAAGCTTATTGGATTGATAATTTTCTATGTCATTGCTATCATAGTAGAAATCATTGGTGGTTTAAGATCCAACAGTCTTGCTGTAATGACAGATGCAGCTCACTTGTTGAGTGATGTTGCTGGTTTCTCTGTTTCCCTCTTTGCGGTTTGGGTCTCGGGATGGGAGGCGACGCCGCAACACTCTTTCGGGTTTAACCGTCTTGAAGTTCTAGGTGCCCTTGTGTCTATACAGCTTATATGGCTGATTTCCGGGCTGTTAATCTACGAGGCGGTTGATCGGATGCTCGGCGAAAGAACTGAGGTTAATGGTTTGCTTATGTTTGCCATTGCAGCTTTTGGTTTTCTTCTCAACTTGTTTATGGTATTGTGGCTTGGTCATAATCATTCTCATTCTCATAGCCATTCTCATTGTTGTCATCATAATCATCAACCTCATCAAAATCACTTGGAGCATGATGACACTGACCATGAAAAGGAGGAGATTTACACAATGACTAAACAAGAGGGAGTTCCTTTGGGGTCAAAAGACAATAGTTCAAGTTTGAACATAAATCTCCAAGGTGCTTATCTTCATGTCATTACTGATATGATTCAATCTATTGGTGTCATGATTGCTGGAGCTGTTCTATGGATTAAACCCGACTGGATTGTCATCGATTTTATCTGCACTCTTGTGTTTTCTGTTCTTGCTTTGGCTACTACTTATTCTATGCTTAGACATATAGGTGGTATATTGATGGAAGGAACACCTAAGGAGGTCAATATTGAGAGCCTAGAACATGATATCAAGAACATGAAAGGAGTCCAAGCATTGCACGACTTGCATATTTGGTCGATCACAGTCGGGAAAGTCGTGTTGTCTTGCCATGTCGTAGCCGAGCAGGGAGTTTGTGTTAGGGAGATCATTTCTAAGATTAGGAACCTTTGTGAAAAGAGATACAATATATTTCATACCACCATACAAGTTGAGTAG 1158 40.41 MGEELPILRIEQWHEARTPVSAKKRNVSFPNSPNVKCCNSGCAFSRLENTNLESLNRSKSAMKLIGLIIFYVIAIIVEIIGGLRSNSLAVMTDAAHLLSDVAGFSVSLFAVWVSGWEATPQHSFGFNRLEVLGALVSIQLIWLISGLLIYEAVDRMLGERTEVNGLLMFAIAAFGFLLNLFMVLWLGHNHSHSHSHSHCCHHNHQPHQNHLEHDDTDHEKEEIYTMTKQEGVPLGSKDNSSSLNINLQGAYLHVITDMIQSIGVMIAGAVLWIKPDWIVIDFICTLVFSVLALATTYSMLRHIGGILMEGTPKEVNIESLEHDIKNMKGVQALHDLHIWSITVGKVVLSCHVVAEQGVCVREIISKIRNLCEKRYNIFHTTIQVE 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19546269 19548587 + Sed0010254.1 Sed13g1429 734939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1429 385 SUPERFAMILY Cation efflux protein transmembrane domain-like 60 309 IPR027469 -
Sed13g1429 385 Pfam Cation efflux family 68 307 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed13g1429 385 Gene3D Cation efflux protein transmembrane domain 62 307 IPR027469 -
Sed13g1429 385 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 31 385 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
Sed13g1429 385 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 314 385 IPR036837 -
Sed13g1429 385 NCBIfam cation diffusion facilitator family transporter 67 385 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3772 Sed-Chr1:66855255 Sed13g1429 Sed-Chr13:19546269 2.50E-76 dispersed
Sed01g3773 Sed-Chr1:66855255 Sed13g1429 Sed-Chr13:19546269 2.50E-76 dispersed
Sed01g1126 Sed-Chr1:8399922 Sed13g1429 Sed-Chr13:19546269 8.30E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1429 K14689 - csv:116403740 562.377