Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g1480 | ATGTCGATCTCTGTCGCCGTTTCGAATTCGCCGGGATTTTCCCCGTCGTCGACGATGTTCTGCAACAAAACGTCGATAATTTCGCCGGCGCCGGAGGCTCTGACGCTGACGTTGGCTCATTTGAAATCGGCGCAAGCTTCTTCTTCGCCGTCTTCCCCTTCTTCACCTTATCGGATCCGGTTTCCGAAACACCATTCTGGGCTTTCTGCCGCGGCGGCGGTGGCTTCCACTTCTTCTCCGTCGTCGGCGATCTTGAAGAGGAAGAGACCGGCGAGGTTGGATATTCCGTTGACGCCGTTGAGCTTTGGGGCTCCGGCGGCGATGCCGTCGCCGTCGTCGTTGAGGGAGGTGGTGGAGGCGGAGAGAGATGGGTACTCTGTTTATTGCAAGAGAGGGAAGAGGAGAACCGCCATGGAAGATCGGTTTTCTGCTTCGGTTCAACTTCGAGGTGATTCCAAAGAGGCATTTTTTGGCGTATTTGATGGACATGGCGGTGCAAAAGCTGCAGAATTTGCAGCAAATAACTTGCATAAGAACGTATTGAATGAACTTGAAAGAATGGCTGATTTTGAAGAAGCCATTAAACATGGCTACCTCGCCACAGATTCTGATTTCCTCAAGGAGGATCAACGCGGTGGCTCATGTTGTGTGACAGCCCTCATCAAGAAAGGCAACCTTGTCGTATCCAATGCCGGTGACTGTCGTGCCGTTCTCAGCAGTGAGGGTGTTGCCGAGGCCATCACCTCCGATCACCGCCCGTCCCGGGAAGATGAAAGGCACCGAATCGAGTCCAGGGGTGGATATGTAGATTTGTGCAAAGGCATTTGGAGAGTTCAGGGATCTCTAGCAGTAACAAGAGGAATCGGTGACGCTCACCTCAAACAATGGGTGATAGCGGAGCCAGAGACGAGGGCAATTCCGATCGAGCCTCGACACGAGTTCTTGATCCTAGCCTCAGACGGGTTATGGGAAACGGTAAGCAACCAAGAAGCAGTGGACATTGCACATCCATTGTGTGTAGGGATTGAGAAGCCAATGCCATTAGAGGCCTGTAAAAAGCTTGTGGAGCTATCACTTTCAAGAGGCTCACTGGATGACATTAGTGTAGTTCTAATTCAATTAGCTAACTTCATTTAA | 1137 | 51.45 | MSISVAVSNSPGFSPSSTMFCNKTSIISPAPEALTLTLAHLKSAQASSSPSSPSSPYRIRFPKHHSGLSAAAAVASTSSPSSAILKRKRPARLDIPLTPLSFGAPAAMPSPSSLREVVEAERDGYSVYCKRGKRRTAMEDRFSASVQLRGDSKEAFFGVFDGHGGAKAAEFAANNLHKNVLNELERMADFEEAIKHGYLATDSDFLKEDQRGGSCCVTALIKKGNLVVSNAGDCRAVLSSEGVAEAITSDHRPSREDERHRIESRGGYVDLCKGIWRVQGSLAVTRGIGDAHLKQWVIAEPETRAIPIEPRHEFLILASDGLWETVSNQEAVDIAHPLCVGIEKPMPLEACKKLVELSLSRGSLDDISVVLIQLANFI | 378 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 19999970 | 20002950 | + | Sed0004166.1 | Sed13g1480 | 734990 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g1480 | 378 | ProSitePatterns | PPM-type phosphatase domain signature. | 156 | 164 | IPR000222 | GO:0043169(InterPro) | |
Sed13g1480 | 378 | FunFam | probable protein phosphatase 2C 25 | 117 | 377 | - | - | |
Sed13g1480 | 378 | Pfam | Protein phosphatase 2C | 129 | 367 | IPR001932 | - | |
Sed13g1480 | 378 | SMART | PP2C_SIG_2 | 133 | 374 | IPR001932 | - | |
Sed13g1480 | 378 | ProSiteProfiles | PPM-type phosphatase domain profile. | 124 | 374 | IPR001932 | - | |
Sed13g1480 | 378 | PANTHER | PROTEIN PHOSPHATASE | 115 | 372 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Sed13g1480 | 378 | SMART | PP2C_4 | 117 | 372 | IPR001932 | - | |
Sed13g1480 | 378 | SUPERFAMILY | PP2C-like | 123 | 375 | IPR036457 | - | |
Sed13g1480 | 378 | CDD | PP2Cc | 124 | 374 | IPR001932 | - | |
Sed13g1480 | 378 | Gene3D | - | 125 | 377 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1173 | Sed-Chr1:8722188 | Sed13g1480 | Sed-Chr13:19999970 | 1.90E-103 | dispersed | |
Sed07g2577 | Sed-Chr7:41354034 | Sed13g1480 | Sed-Chr13:19999970 | 1.30E-97 | dispersed | |
Sed07g2578 | Sed-Chr7:41354034 | Sed13g1480 | Sed-Chr13:19999970 | 1.10E-56 | dispersed | |
Sed13g1480 | Sed-Chr13:19999970 | Sed13g1941 | Sed-Chr13:24319361 | 2.10E-47 | dispersed | |
Sed14g1221 | Sed-Chr14:21410055 | Sed13g1480 | Sed-Chr13:19999970 | 1.10E-22 | dispersed | |
Sed14g1222 | Sed-Chr14:21410055 | Sed13g1480 | Sed-Chr13:19999970 | 1.10E-22 | dispersed | |
Sed03g2656 | Sed-Chr3:42783640 | Sed13g1480 | Sed-Chr13:19999970 | 9.70E-65 | transposed | |
Sed01g1172 | Sed-Chr1:8722188 | Sed13g1480 | Sed-Chr13:19999970 | 1.10E-165 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g1480 | K17506 | - | csv:101207841 | 622.854 |