Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1480 ATGTCGATCTCTGTCGCCGTTTCGAATTCGCCGGGATTTTCCCCGTCGTCGACGATGTTCTGCAACAAAACGTCGATAATTTCGCCGGCGCCGGAGGCTCTGACGCTGACGTTGGCTCATTTGAAATCGGCGCAAGCTTCTTCTTCGCCGTCTTCCCCTTCTTCACCTTATCGGATCCGGTTTCCGAAACACCATTCTGGGCTTTCTGCCGCGGCGGCGGTGGCTTCCACTTCTTCTCCGTCGTCGGCGATCTTGAAGAGGAAGAGACCGGCGAGGTTGGATATTCCGTTGACGCCGTTGAGCTTTGGGGCTCCGGCGGCGATGCCGTCGCCGTCGTCGTTGAGGGAGGTGGTGGAGGCGGAGAGAGATGGGTACTCTGTTTATTGCAAGAGAGGGAAGAGGAGAACCGCCATGGAAGATCGGTTTTCTGCTTCGGTTCAACTTCGAGGTGATTCCAAAGAGGCATTTTTTGGCGTATTTGATGGACATGGCGGTGCAAAAGCTGCAGAATTTGCAGCAAATAACTTGCATAAGAACGTATTGAATGAACTTGAAAGAATGGCTGATTTTGAAGAAGCCATTAAACATGGCTACCTCGCCACAGATTCTGATTTCCTCAAGGAGGATCAACGCGGTGGCTCATGTTGTGTGACAGCCCTCATCAAGAAAGGCAACCTTGTCGTATCCAATGCCGGTGACTGTCGTGCCGTTCTCAGCAGTGAGGGTGTTGCCGAGGCCATCACCTCCGATCACCGCCCGTCCCGGGAAGATGAAAGGCACCGAATCGAGTCCAGGGGTGGATATGTAGATTTGTGCAAAGGCATTTGGAGAGTTCAGGGATCTCTAGCAGTAACAAGAGGAATCGGTGACGCTCACCTCAAACAATGGGTGATAGCGGAGCCAGAGACGAGGGCAATTCCGATCGAGCCTCGACACGAGTTCTTGATCCTAGCCTCAGACGGGTTATGGGAAACGGTAAGCAACCAAGAAGCAGTGGACATTGCACATCCATTGTGTGTAGGGATTGAGAAGCCAATGCCATTAGAGGCCTGTAAAAAGCTTGTGGAGCTATCACTTTCAAGAGGCTCACTGGATGACATTAGTGTAGTTCTAATTCAATTAGCTAACTTCATTTAA 1137 51.45 MSISVAVSNSPGFSPSSTMFCNKTSIISPAPEALTLTLAHLKSAQASSSPSSPSSPYRIRFPKHHSGLSAAAAVASTSSPSSAILKRKRPARLDIPLTPLSFGAPAAMPSPSSLREVVEAERDGYSVYCKRGKRRTAMEDRFSASVQLRGDSKEAFFGVFDGHGGAKAAEFAANNLHKNVLNELERMADFEEAIKHGYLATDSDFLKEDQRGGSCCVTALIKKGNLVVSNAGDCRAVLSSEGVAEAITSDHRPSREDERHRIESRGGYVDLCKGIWRVQGSLAVTRGIGDAHLKQWVIAEPETRAIPIEPRHEFLILASDGLWETVSNQEAVDIAHPLCVGIEKPMPLEACKKLVELSLSRGSLDDISVVLIQLANFI 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19999970 20002950 + Sed0004166.1 Sed13g1480 734990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1480 378 ProSitePatterns PPM-type phosphatase domain signature. 156 164 IPR000222 GO:0043169(InterPro)
Sed13g1480 378 FunFam probable protein phosphatase 2C 25 117 377 - -
Sed13g1480 378 Pfam Protein phosphatase 2C 129 367 IPR001932 -
Sed13g1480 378 SMART PP2C_SIG_2 133 374 IPR001932 -
Sed13g1480 378 ProSiteProfiles PPM-type phosphatase domain profile. 124 374 IPR001932 -
Sed13g1480 378 PANTHER PROTEIN PHOSPHATASE 115 372 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed13g1480 378 SMART PP2C_4 117 372 IPR001932 -
Sed13g1480 378 SUPERFAMILY PP2C-like 123 375 IPR036457 -
Sed13g1480 378 CDD PP2Cc 124 374 IPR001932 -
Sed13g1480 378 Gene3D - 125 377 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1173 Sed-Chr1:8722188 Sed13g1480 Sed-Chr13:19999970 1.90E-103 dispersed
Sed07g2577 Sed-Chr7:41354034 Sed13g1480 Sed-Chr13:19999970 1.30E-97 dispersed
Sed07g2578 Sed-Chr7:41354034 Sed13g1480 Sed-Chr13:19999970 1.10E-56 dispersed
Sed13g1480 Sed-Chr13:19999970 Sed13g1941 Sed-Chr13:24319361 2.10E-47 dispersed
Sed14g1221 Sed-Chr14:21410055 Sed13g1480 Sed-Chr13:19999970 1.10E-22 dispersed
Sed14g1222 Sed-Chr14:21410055 Sed13g1480 Sed-Chr13:19999970 1.10E-22 dispersed
Sed03g2656 Sed-Chr3:42783640 Sed13g1480 Sed-Chr13:19999970 9.70E-65 transposed
Sed01g1172 Sed-Chr1:8722188 Sed13g1480 Sed-Chr13:19999970 1.10E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1480 K17506 - csv:101207841 622.854