Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1482 ATGGCGAATATGACGGCGAATTCGTGGACAAGAACTAACTACGTCATCGGAAAAGGCTCCTTCGGAACTGTAACCGCCGGAATCAGAAATTCAGACGGTGGGATCTTCGCCGTGAAATCTGTAAAACAGAGTGTTGAATTCCAGCGAGAAATCGAGTGTTTGGAGAACGAAATTCGGATTCTCCGGTCGTTAAACTCGCCGTACGTGGTGGGTTTTCTCGGCGAAGACGTTTCCGGCGAGTCTCCGCCGTATCGGAATCTGCACATAGAGTATTTGCCTGGAGGCACTGTCGCCGACGACCCCACCGGCGCCGGCGACGAGAAGATTTTACGGGCGAGGACGCGGTGTATAGTTTCGGCTCTGGGTTATGTTCATTCGAAAGGAATTGTTCATTGTGATGTGAAAGGGAGGAATGTTTTGATGGGTTTGGATCGGAATTTTGCGAAATTGGCCGATTTCGGCTCTGCAATTTCCGAAGCCGGCGACACGTGCGGGGGTACGGTGGTGGCACGTGGGAGTCCGCTGTGGATGGCGCCGGAGGTGGTTCGAGGGGAATATCAAGGGCCGGAATCGGACGTTTGGTCGGTTGGGTGTACGGTCATCGAAATGTTCACCGGGAAACCGGCGTGGGAAGATTTCGGCGCCGATACGGTGAGTCGAATCGGATTTTCCGGCGAGGTTCCGGCGTTTCCGGCCGGATTGTCTGAGATTGGCCGGGATTTTCTCCGGAAGTGTCTTGGAAGAGATCGGAGTGAGCGGTGGAGCTGTGATCGGCTGCTGCAGCATCCGTTTCTGGCGGCGGTGGCATCGCCGGGTTTTTCGGGCGGGAATTCTCCACGGTGTGTGCTCGATTGGGTCGACGATGAAAATGAAGAAATCGGTTTTTCCGGTGAAATTCCCGGCGCCGAGAGCCGGGAAAGTGAGATCGCCGGCAAGGGTAGAATTGGGAAATTGAGTTCGAGTGATTGGCCGGAGTGGGAATCCGACGGTTGGTCGCCGGTGAGAAGTTACTGCTGTGAATGGTTGCCGGCGCCGGCGATATTTGAAGAAGAAGTGGAAGGGGCAGAATGGGAATATGGGAATTTTAGAGGGGTAGAAGGGGAAATGGAGGGAACAAGTTTGGAATATTCCGACGGAAAATTTGAAGCCGAGTATTCAAATTCCGGCGATCTGGAGATTCCGTCGTTGCCACGTAATAATTCCGGCAGCGGCGCAAGAAACGGTGGCGGTGGGTTAAATTGCCGGCGACTATGTGTGTCTGAAATATCTTTTTGTAGTCAGTTCTTTGGTTTTTATATAAAAAAAAGTAAGATTGTATTTCAAAACAAAAACTACTAA 1338 52.17 MANMTANSWTRTNYVIGKGSFGTVTAGIRNSDGGIFAVKSVKQSVEFQREIECLENEIRILRSLNSPYVVGFLGEDVSGESPPYRNLHIEYLPGGTVADDPTGAGDEKILRARTRCIVSALGYVHSKGIVHCDVKGRNVLMGLDRNFAKLADFGSAISEAGDTCGGTVVARGSPLWMAPEVVRGEYQGPESDVWSVGCTVIEMFTGKPAWEDFGADTVSRIGFSGEVPAFPAGLSEIGRDFLRKCLGRDRSERWSCDRLLQHPFLAAVASPGFSGGNSPRCVLDWVDDENEEIGFSGEIPGAESRESEIAGKGRIGKLSSSDWPEWESDGWSPVRSYCCEWLPAPAIFEEEVEGAEWEYGNFRGVEGEMEGTSLEYSDGKFEAEYSNSGDLEIPSLPRNNSGSGARNGGGGLNCRRLCVSEISFCSQFFGFYIKKSKIVFQNKNY 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20034269 20037396 + Sed0027354.1 Sed13g1482 734992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1482 445 SUPERFAMILY Protein kinase-like (PK-like) 15 270 IPR011009 -
Sed13g1482 445 Coils Coil 44 64 - -
Sed13g1482 445 ProSiteProfiles Protein kinase domain profile. 10 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1482 445 SMART serkin_6 10 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1482 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1482 445 CDD STKc_MAPKKK 8 265 - -
Sed13g1482 445 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524(InterPro)
Sed13g1482 445 Gene3D Transferase(Phosphotransferase) domain 1 6 277 - -
Sed13g1482 445 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 266 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed13g1482 445 Pfam Protein kinase domain 14 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1482 Sed-Chr13:20034269 Sed14g1340 Sed-Chr14:22237849 8.10E-46 dispersed
Sed01g1174 Sed-Chr1:8737856 Sed13g1482 Sed-Chr13:20034269 2.50E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80101 PF00069 Pkinase 4.90E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1482 - - - 0.0