Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1498 ATGTCGACGACGGAGACCAACGCCGATCTCGTCTGCGTCACCGGCGCCAGCGGCTGCATCGGATCTTGGCTCGTTCACCTCCTCCTCCGCCGCGGCTACTCCGTTCACGCCACCGTCCAGAATCTCAAGGACGAGAAAGAAACGAAGCATTTGGAGGATTTTGAAGGAGCGGATTCTCGTCTTCGTCTCTTCCAAATCGATCTCCTCGATTACGACTCCATCGTCGCCGCCGTCGCCGGTTGCGCCGGCGTCTTCCACGTTGCGTCTCCCTGCATCGTTGATCCCGTCGAAGATCCCGAGAGAGATTTGTTGGATCCGGCTATCAAAGGAACGATCAACGTTCTGACGGCGGCTAAGGAGGCTGGAGTTCAACGCGTGGTGGTTACTTCTTCTGTCTCCGCCATGATTCCGAACCCTAACTGGCCGCCGAATGTTGTATTGAATGACGAATGTTGGACTGATATTGATTACTGCAAGAAAAACGGGCTGTGGTATTCGGTTTCAAAAACTCTAGCAGAAAAGGCAGCTTGGGAGTTTGCCAAGGAGAAAGGATTGGATGTGGTGGTGATTAATCCTGGCACAGTGATGGGCCCTGTTTTTGCTCCCAGAATTAATGCAAGCATGCAAATGCTTTTAAAACTTCTCGAGGGGTGCAGTGAGACATTTGCGGACGTGTTTATAGGAGTAGTGCACTTTAAAGATGTTGCCTTAGCACACATTTTGGTGTATGAAAACAAATCAGCAACTGGAAGGCACTTTTGTGCTGAGTCCATAGCCAGTTACTCTGACTATGTCACCAAGGTTGCTGAACTCTTCCCTCAGTATAAGGTGCCCAGGTCGATAGACAATGCACAACCTGATTTGGTGAGATCGAAAGAGGCTGGTAAGAAGTTGATGAACCTGGGATTGGAATTCATACAAATGGAACAAATCCTGAAGGAGGGTGTTGAGGAGCTAAAGAAGAAGGGATATATTTCCTGA 981 49.64 MSTTETNADLVCVTGASGCIGSWLVHLLLRRGYSVHATVQNLKDEKETKHLEDFEGADSRLRLFQIDLLDYDSIVAAVAGCAGVFHVASPCIVDPVEDPERDLLDPAIKGTINVLTAAKEAGVQRVVVTSSVSAMIPNPNWPPNVVLNDECWTDIDYCKKNGLWYSVSKTLAEKAAWEFAKEKGLDVVVINPGTVMGPVFAPRINASMQMLLKLLEGCSETFADVFIGVVHFKDVALAHILVYENKSATGRHFCAESIASYSDYVTKVAELFPQYKVPRSIDNAQPDLVRSKEAGKKLMNLGLEFIQMEQILKEGVEELKKKGYIS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20200429 20208994 - Sed0016299.3 Sed13g1498 735008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1498 326 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 11 317 IPR050425 GO:0016616(PANTHER)
Sed13g1498 326 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 318 IPR036291 -
Sed13g1498 326 FunFam Cinnamoyl-CoA reductase 1 4 326 - -
Sed13g1498 326 CDD FR_SDR_e 11 303 - -
Sed13g1498 326 Gene3D - 2 326 - -
Sed13g1498 326 Pfam NAD dependent epimerase/dehydratase family 11 252 IPR001509 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0750 Sed-Chr7:5602675 Sed13g1498 Sed-Chr13:20200429 4.20E-79 dispersed
Sed07g1823 Sed-Chr7:21025021 Sed13g1498 Sed-Chr13:20200429 5.10E-85 dispersed
Sed09g0116 Sed-Chr9:891426 Sed13g1498 Sed-Chr13:20200429 2.50E-47 dispersed
Sed09g1401 Sed-Chr9:37893577 Sed13g1498 Sed-Chr13:20200429 5.70E-59 dispersed
Sed13g1498 Sed-Chr13:20200429 Sed13g1500 Sed-Chr13:20201614 1.90E-124 dispersed
Sed13g1498 Sed-Chr13:20200429 Sed13g1499 Sed-Chr13:20201614 6.30E-189 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1498 - - - 0.0