Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1499 ATGTCGACGACGGAGACCAACGCCGATCTCGTCTGCGTCACCGGCGCCAGCGGCTGCATCGGATCTTGGCTCGTTCACCTCCTCCTCCGCCGCGGCTACTCCGTTCACGCCACCGTCCAGAATCTCAAGGACGAGAAAGAAACGAAGCATTTGGAGGATTTTGAAGGAGCGGATTCTCGTCTTCGTCTCTTCCAAATCGATCTCCTCGATTACGACTCCATCGTCGCCGCCGTCGCCGGTTGCGCCGGCGTCTTCCACGTTGCGTCTCCCTGCATCGTTGATCCCGTCGAAGATCCCGAGAGAGATTTGTTGGATCCGGCTATCAAAGGAACGATCAACGTTCTGACGGCGGCTAAGGAGGCTGGAGTTCAACGCGTGGTGGTTACTTCTTCTGTCTCCGCCATGATTCCGAACCCTAACTGGCCGCCGAATGTTGTATTGAATGACGAATGTTGGACTGATATTGATTACTGCAAGAAAAACGGGCTGTGGTATTCGGTTTCAAAAACTCTAGCAGAAAAGGCAGCTTGGGAGTTTGCCAAGGAGAAAGGATTGGATGTGGTGGTGATTAATCCTGGCACAGTGATGGGCCCTGTTTTTGCTCCCAGAATTAATGCAAGCATGCAAATGCTTTTAAAACTTCTCGAGGGGTGCAGTGAGACATTTGCGGACGTGTTTATAGGAGTAGTGCACTTTAAAGATGTTGCCTTAGCACACATTTTGGTGTATGAAAACAAATCAGCAACTGGAAGGCACTTTTGTGCTGAGTCCATAGCCAGTTACTCTGACTATGTCACCAAGGTTGCTGAACTCTTCCCTCAGTATAAGGTGCCCAGGTCGATAGACAATGCACAACCTGATTTGGTGAGATCGAAAGAGGCTGGTAAGAAGTTGATGAACCTGGGATTGGAATTCATACAAATGGAACAAATCCTGAAGGAGGGTGTTGAGGAGCTAAAGAAGAAGGGATATATTTCCTGA 981 49.64 MSTTETNADLVCVTGASGCIGSWLVHLLLRRGYSVHATVQNLKDEKETKHLEDFEGADSRLRLFQIDLLDYDSIVAAVAGCAGVFHVASPCIVDPVEDPERDLLDPAIKGTINVLTAAKEAGVQRVVVTSSVSAMIPNPNWPPNVVLNDECWTDIDYCKKNGLWYSVSKTLAEKAAWEFAKEKGLDVVVINPGTVMGPVFAPRINASMQMLLKLLEGCSETFADVFIGVVHFKDVALAHILVYENKSATGRHFCAESIASYSDYVTKVAELFPQYKVPRSIDNAQPDLVRSKEAGKKLMNLGLEFIQMEQILKEGVEELKKKGYIS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20201614 20208994 - Sed0016299.1 Sed13g1499 735009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1499 326 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 11 317 IPR050425 GO:0016616(PANTHER)
Sed13g1499 326 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 318 IPR036291 -
Sed13g1499 326 FunFam Cinnamoyl-CoA reductase 1 4 326 - -
Sed13g1499 326 CDD FR_SDR_e 11 303 - -
Sed13g1499 326 Gene3D - 2 326 - -
Sed13g1499 326 Pfam NAD dependent epimerase/dehydratase family 11 252 IPR001509 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1498 Sed-Chr13:20200429 Sed13g1499 Sed-Chr13:20201614 6.30E-189 tandem
Sed13g1499 Sed-Chr13:20201614 Sed13g1500 Sed-Chr13:20201614 1.90E-124 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1499 - - - 0.0