Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1500 ATGTCGACGACGGAGACCAACGCCGATCTCGTCTGCGTCACCGGCGCCAGCGGCTGCATCGGATCTTGGCTCGTTCACCTCCTCCTCCGCCGCGGCTACTCCGTTCACGCCACCGTCCAGAATCTCAAGGACGAGAAAGAAACGAAGCATTTGGAGGATTTTGAAGGAGCGGATTCTCGTCTTCGTCTCTTCCAAATCGATCTCCTCGATTACGACTCCATCGTCGCCGCCGTCGCCGGTTGCGCCGGCGTCTTCCACGTTGCGTCTCCCTGCATCGTTGATCCCGTCGAAGATCCCGAGAGAGATTTGTTGGATCCGGCTATCAAAGGAACGATCAACGTTCTGACGGCGGCTAAGGAGGCTGGAGTTCAACGCGTGGTGGTTACTTCTTCTGTCTCCGCCATGATTCCGAACCCTAACTGGCCGCCGAATGTTGTATTGAATGACGAATGTTGGACTGATATTGATTACTGCAAGAAAAACGGGCTGTGGTATTCGGTTTCAAAAACTCTAGCAGAAAAGGCAGCTTGGGAGTTTGCCAAGGAGAAAGGATTGGATGTGGTGGTGATTAATCCTGGCACAGTGATGGGCCCTGTTTTTGCTCCCAGAATTAATGCAAGCATGCAAATGCTTTTAAAACTTCTCGAGGGAGCCGGTGGAAGAGATGGCAAAGCCAAAAGGGAGTTAACCAATACAAGGTGA 702 52.42 MSTTETNADLVCVTGASGCIGSWLVHLLLRRGYSVHATVQNLKDEKETKHLEDFEGADSRLRLFQIDLLDYDSIVAAVAGCAGVFHVASPCIVDPVEDPERDLLDPAIKGTINVLTAAKEAGVQRVVVTSSVSAMIPNPNWPPNVVLNDECWTDIDYCKKNGLWYSVSKTLAEKAAWEFAKEKGLDVVVINPGTVMGPVFAPRINASMQMLLKLLEGAGGRDGKAKRELTNTR 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20201614 20208994 - Sed0016299.2 Sed13g1500 735010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1500 233 Pfam NAD dependent epimerase/dehydratase family 11 228 IPR001509 -
Sed13g1500 233 CDD FR_SDR_e 11 218 - -
Sed13g1500 233 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 11 215 IPR050425 GO:0016616(PANTHER)
Sed13g1500 233 FunFam Dihydroflavonol reductase 8 228 - -
Sed13g1500 233 Gene3D - 2 231 - -
Sed13g1500 233 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 219 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1498 Sed-Chr13:20200429 Sed13g1500 Sed-Chr13:20201614 1.90E-124 dispersed
Sed13g1499 Sed-Chr13:20201614 Sed13g1500 Sed-Chr13:20201614 1.90E-124 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1500 - - - 0.0